Table 1.
Appropriate metrics and number of nearest neighbors to assess the performance of various descriptor read-across prediction of chronic liver toxicity. Column 2 represents the descriptors type including: chemical structure (chm), biological (bio), and hybrid (CB). Descriptors names in column 3 include: Biological (B) − Assay (asy) and Gene (ge); Chemical Structure (C) − Morgan (mrgn), Toxprints (toxp), Topological Torsion (tptr), all chemicals combination descriptor (CC), Chemical + Biological Hybrid (CB) − Morgan + Assay (MA), Morgan + Gene (MG), Topological Torsion + Assay (TTA), Topological Torsion + Gene (TTG), Toxprints + Assay (TXA), Toxprints + Gene (TXG), and all chemical and biological descriptors combined (CB). Column 4 denotes the AUC performance values for each descriptor in predicting chronic liver toxicity effect. Column 5–6 denote the appropriate similarity metric and number of neighbors to make accurate prediction for each descriptor. Major descriptors of interest are marked bold.
Liver Effect | Descriptor Type | Descriptor Name | AUC | Metric | N Neighbors |
---|---|---|---|---|---|
Chr_liver | Chm | Tptr | 0.6303 | Euclidean | 9 |
Chm | Mrgn | 0.64549 | Jaccard | 8 | |
Chm | Toxp | 0.61379 | Jaccard | 7 | |
Bio | Ge | 0.648847 | Euclidean | 14 | |
Bio | Asy | 0.6632 | Euclidean | 11 | |
CB | mrgn + asy | 0.6883 | Jaccard | 13 | |
CB | toxp + ge | 0.7044 | Jaccard | 10 | |
CB | tptr + ge | 0.6818 | Euclidean | 6 | |
CB | (CB) all | 0.6999 | Jaccard | 14 | |
Chm | (CC) all | 0.6702 | Jaccard | 10 | |
CB | mrgn + ge | 0.7049 | Jaccard | 10 | |
CB | toxp + asy | 0.6992 | Jaccard | 14 | |
CB | tptr + asy | 0.6721 | Manhattan | 5 |