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. 2023 Jun 14;14(1):62. doi: 10.1186/s12645-023-00213-7

Table 1.

Selected CTL peptide epitopes and their scores

Database	Allele		Sequence	Start–End	Length (aa)^c	MHC prediction		TAP prediction score		Combined prediction score		% Rank		Affinity (1-log50k)
Database	HLA^a	MHC^b	Sequence	Start–End	Length (aa)^c	HLA	MHC	HLA	MHC	HLA	MHC	HLA	MHC	HLA	MHC
NetCTLpan	HLA-A*02:01	H-2-Db H-2-kb	YMISYAGMV (V1)	189–198	9	0.861		0.539		0.95325		0.4
	HLA-A*02:01	H-2-Db H-2-kb	YTVILTNPI (V2)	396–404	9	0.394		0.712		0.6235		3
	HLA-A*02:01	H-2-Db H-2-kb	IQAANVSAL (V3)	519–527	9	0.441		1.117		0.58019		4
IEDB	HLA-A*02:01	H-2-Db H-2-kb	YMISYAGMV (V1)	189–198	9	− 2.16	− 1.98	0.24	0.23	− 0.96	− 0.86
	HLA-A*02:01	H-2-Db H-2-kb	YTVILTNPI (V2)	396–404	9	− 2.65	− 2.48	0.31	0.31	− 1.57	− 1.26
	HLA-A*02:01	H-2-Db /H-2-kb	IQAANVSAL (V3)	519–527	9	− 2.6	− 2.04	0.49	0.49	− 0.85	− 0.29
NetMHC 4.0	HLA-A*02:01	H-2-Db H-2-kb	YMISYAGMV (V1)	189–198	9			`				0.5	2	0.828	0.483
	HLA-A*02:01	H-2-Db H-2-kb	YTVILTNPI (V2)	396–404	9							3	0.1	0.435	0.515
	HLA-A*02:01	H-2-Db H-2-kb	IQAANVSAL (V3)	519–527	9							3.5	0.12	0.4	0.499
PickPocket 1.1	HLA-A*02:01	H-2-Db H-2-kb	YMISYAGMV (V1)	189–198	9									0.796	0.413
	HLA-A*02:01	H-2-Db H-2-kb	YTVILTNPI (V2)	396–404	9									0.434	0.407
	HLA-A*02:01	H-2-Db H-2-kb	IQAANVSAL (V3)	519–527	9									0.492	0.466

^aHuman leukocyte antigen

^bMajor histocompatibility complex

^CAmino acid