Table 3.
Average change in main-chain hydrogen bonding per peptide during the last 50 ns simulations with the crystal structure as a reference
| Sequence | T (K) | AMBER19SB | CHARMM36m | OPLS-AA/M |
|---|---|---|---|---|
| NNQQNY | 293 | 0.3 | −0.1 | −0.1 |
| NNQQNY | 100 | 0.0 | 0.1 | 0.1 |
| GNNQQNY | 293 | 0.0 | 0.0 | −0.1 |
| GNNQQNY | 100 | −0.7 | 0.0 | −0.0 |
| NNQQ (1) | 298 | 0.2 | −0.0 | 0.1 |
| NNQQ (1) | 100 | 0.2 | 0.1 | 0.2 |
| NNQQ (2) | 298 | 0.1 | 0.2 | 0.2 |
| NNQQ (2) | 100 | 0.2 | 0.2 | 0.3 |
| GGVVIA | 291 | 0.1 | −0.0 | 0.2 |
| GGVVIA | 100 | 0.5 | −0.1 | −0.1 |
| MVGGVV (1) | 298 | 0.2 | −0.1 | −0.5 |
| MVGGVV (1) | 100 | 0.0 | −0.0 | −0.2 |
| MVGGVV (2) | 291 | 0.1 | −0.7 | −0.3 |
| MVGGVV (2) | 100 | 0.8 | −0.4 | 0.1 |
| VQIVYK | 291 | −0.0 | −0.0 | −0.1 |
| VQIVYK | 100 | −0.0 | 0.1 | 0.3 |
| LYQLEN | 310 | −0.2 | 0.4 | 0.1 |
| LYQLEN | 100 | 0.5 | 0.2 | −0.2 |
| VEALYL | 310 | 0.0 | 0.6 | 0.5 |
| VEALYL | 100 | 0.2 | 0.8 | 0.1 |
| NNFGAIL | 293 | 0.4 | 0.2 | 0.1 |
| NNFGAIL | 100 | 0.8 | −0.2 | −0.1 |
| SSTNVG | 293 | 0.0 | 0.0 | 0.4 |
| SSTNVG | 100 | 0.2 | −0.0 | −0.0 |