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. 2023 May 5;42(3):192–204. doi: 10.1007/s10930-023-10119-3

Table 3.

Average change in main-chain hydrogen bonding per peptide during the last 50 ns simulations with the crystal structure as a reference

Sequence T (K) AMBER19SB CHARMM36m OPLS-AA/M
NNQQNY 293 0.3 −0.1 −0.1
NNQQNY 100 0.0 0.1 0.1
GNNQQNY 293 0.0 0.0 −0.1
GNNQQNY 100 −0.7 0.0 −0.0
NNQQ (1) 298 0.2 −0.0 0.1
NNQQ (1) 100 0.2 0.1 0.2
NNQQ (2) 298 0.1 0.2 0.2
NNQQ (2) 100 0.2 0.2 0.3
GGVVIA 291 0.1 −0.0 0.2
GGVVIA 100 0.5 −0.1 −0.1
MVGGVV (1) 298 0.2 −0.1 −0.5
MVGGVV (1) 100 0.0 −0.0 −0.2
MVGGVV (2) 291 0.1 −0.7 −0.3
MVGGVV (2) 100 0.8 −0.4 0.1
VQIVYK 291 −0.0 −0.0 −0.1
VQIVYK 100 −0.0 0.1 0.3
LYQLEN 310 −0.2 0.4 0.1
LYQLEN 100 0.5 0.2 −0.2
VEALYL 310 0.0 0.6 0.5
VEALYL 100 0.2 0.8 0.1
NNFGAIL 293 0.4 0.2 0.1
NNFGAIL 100 0.8 −0.2 −0.1
SSTNVG 293 0.0 0.0 0.4
SSTNVG 100 0.2 −0.0 −0.0