Table 2.

Software used by each participating team for data processing and quality control.

Team	Software for processing	Software for QC
(A) Birn	AFNI, FSL, ANTs	AFNI
(B) Di and Biswal	SPM, Matlab	SPM, Matlab
(C) Etzel	fMRIPrep (with ANTs, AFNI, FreeSurfer, FSL, Nipype)	R (with knitr, RNifti and fields), AFNI
(D) Lepping et al.	AFNI	AFNI, REDCap
(E) Lu and Yan	DPABI, DPABISurf, DPARSF, fMRIPrep, FreeSurfer, ANTs, FSL, AFNI, SPM, PALM, Matlab, DARTEL	DPABISurf, DPARSF, fMRIPrep, Matlab
(F) Morfini et al.	CONN (with ART), SPM12, Matlab	CONN, SPM12, Matlab, FSLeyes
(G) Provins et al.	MRIQC (with ANTs, AFNI, FreeSurfer, FSL, Nipype, SynthStrip), fMRIPrep (with ANTs, AFNI, FreeSurfer, FSL, Nipype)	MRIQC (with ANTs, AFNI, FreeSurfer, FSL, Nipype, SynthStrip), fMRIPrep (with ANTs, AFNI, FreeSurfer, FSL, Nipype)
(H) Reynolds et al.	AFNI, FreeSurfer	AFNI
(I) Teves et al.	FreeSurfer, AFNI	AFNI
(J) Williams et al.	FSL, cinnqc (with FSL and pyfMRIqc)	pyfMRIqc

Citations for each are included here, in alphabetical order: AFNI (Cox, 1996), ANTs (Avants et al., 2012), ART (Ardekani and Bachman, 2009), cinnqc (https://github.com/bwilliams96/cinnqc), CONN (Whitfield-Gabrieli and Nieto-Castanon, 2012; Nieto-Castanon, 2020), DARTEL (Goto et al., 2013), DPABI (Yan et al., 2016), DPABISurf (Yan et al., 2021), DPARSF (Yan and Zang, 2010), fields (Nychka et al., 2017), fMRIPrep (Esteban et al., 2019), FreeSurfer (Fischl and Dale, 2000), FSL (Smith et al., 2004), FSLeyes (McCarthy, 2022), knitr (Xie, 2014), Matlab (www.mathworks.com), MRIQC (Esteban et al., 2017), Nipype (Gorgolewski et al., 2011), PALM (Winkler et al., 2014), pyfMRIqc (Williams and Lindner, 2020), REDCap (Harris et al., 2009, 2019), RNifti (Clayden et al., 2020), SPM (https://www.fil.ion.ucl.ac.uk/spm/; Ashburner, 2012), and SynthStrip (Hoopes et al., 2022).