. 2023 May 22;9(1):vead034. doi: 10.1093/ve/vead034

Table 3.

A summary of distinct populations of repeat sequences.

A. Difference(s) found in repeat regions within individuals (see Supplementary Fig. S3)
	IR1			IR2			LANAr
PtID^a	Templates	Differences^b	Supplementary Fig. S3 ^c	Templates	Differences^b	Supplementary Fig. S3 ^c	Templates	Differences^b	Supplementary Fig. S3 ^c
U003	4	None	S3A	2	None	S3A	1	N/A^d	S3A
U004	58	TRU	S3B	39	SNV, TRU	S3C	76	None	S3D
U007	10	SNV, TRU	S3E	21	SNV	S3F	31	None	S3G
U008^e	15	None	S3G	5	None	S3G	46	None	S3H
U020	20	None	S3I	3	None	S3I	16	SNV	S3I
U021	119	TRU	S3J	39	TRU	S3K	113	SNV	S3L
U030	21	None	S3M	75	SNV	S3N	93	SNV	S3O
U032	3	None	S3P	4	None	S3P	8	SNV	S3P
U034	16	None	S3Q	7	None	S3Q	17	None	S3Q
U048	90	None	S3R	139	TRU	S3S	171	SNV	S3T
U156	110	None	S3U	34	None	S3V	122	None	S3W
U191	15	None	S3X	6	None	S3X	6	SNV	S3X
U210	31	TRU	S3Y	61	None	S3Z	59	none	S3AA
U215	48	TRU	S3AB	19	TRU	S3AC	22	none	S3AC
U216	127	None	S3AD	84	TRU	S3AE	96	TRU, SNV	S3AF
U217	22	TRU	S3AG	32	TRU	S3AH	0	N/A	N/A
B. Difference(s) between tissue-specific consensuses within individuals (see Supplementary Fig. S3)
PtID	Tumor	Oral swab	IR1^f	No. ^g	IR2^f		No.^g	LANAr^f	No.^g
U004	2	1	None	58	SNV (U004o), TRU (U004C); Supplementary Fig. S3C		38	None	7
U007	1	1	SNV + TRU (U007o); Supplementary Fig. S3E	10	None		20	None	29
U008	2	1	None	15	None		5	None	46
U020	2	1	None	17	N/A		3	SNV (U020C); Supplementary Fig. S3I	16
U021	2	0	TRU (U021C); Supplementary Fig. S3J	117	TRU (U021C); Supplementary Fig. S3K		39	None	110
U034	2	0	None	14	N/A		7	None	17
U048	2	0	None	90	None		140	None	168
U156	2	0	None	123	None		38	None	122
U191	2	0	N/A	15	N/A		6	None	6
U217	1	1	TRU (U217o); Supplementary Fig. S3AG	22	N/A		33	N/A	0

PtID—participant identifier.

SNV and TRU count variants were only counted when they were shared by at least two templates. Refer to Supplementary Fig. S3.

Location within Supplementary Fig. S3, where alignment is shown.

N/A—not enough template sequences available for comparison.

The bolded rows indicate individuals in which no differences were detected in any of the three repeat regions.

The tissue in which tissue-specific consensus changes were found is indicated within parentheses. N/A indicates that no template sequences from other tissues were available for comparison.

Number of templates.