Table 1.
A summary of Heliopora coerulea genome, mRNA, lncRNA, and miRNA sequencing data.
| Sample | Library type | Sequencing platform | Raw data (million reads) | Filtered data (million reads) | Read length (bp) |
|---|---|---|---|---|---|
| Genome | |||||
| 350 bp insert size | Hiseq Xten | 182.1 (54.6 Gb) | 148.2 (42.0 Gb) | PE150 | |
| 500 bp insert size | Hiseq Xten | 226.1 (67.8 Gb) | 169.5 (46.8 Gb) | PE150 | |
| PacBio HiFi | PacBio Sequal II | 2.3 (31.8 Gb; N50 = 14.0 kb; mean length = 13.5 kb) | — | ||
| mRNAseq | |||||
| Replicate_1 | cDNA | Hiseq Xten | 48.4 (14.5 Gb) | 28.0 (7.9 Gb) | PE150 |
| Replicate_2 | cDNA | Hiseq Xten | 37.3 (11.2 Gb) | 34.5 (9.5 Gb) | PE150 |
| lncRNAseq | |||||
| Replicate_1 | Long non-coding RNA | NovaSeq 6000 | 40.3 (12.0 Gb) | 33.3 (9.3 Gb) | PE150 |
| Replicate_2 | Long non-coding RNA | NovaSeq 6000 | 40.4 (12.1 Gb) | 34.5 (9.7 Gb) | PE150 |
| miRNA | |||||
| Replicate_1 | Micro RNA | NovaSeq 6000 | 11.6 (592.3 Mb) | 11.2 (299.4 Mb) | SE50 |
| Replicate_2 | Micro RNA | NovaSeq 6000 | 12.6 (644.4 Mb) | 11,7 (300.7 Mb) | SE50 |