Table 4.
Assembly statistics of 15 cnidarian genomes.
| Species | Genome (Mb) | Scaffold No. | GC (%) | N50 (Mb) | Max (Mb) | Gene No. | BUSCO genome – eukaryota_odb10 | BUSCO genome – metazoa_odb10 | BUSCO gene – eukaryota_odb10 | BUSCO gene – metazoa_odb10 | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Hydra vulgaris | 819.4 | 56 | 26.9 | 77.98 | 55.05 | 32,703 | C:96.5%[S:95.7%,D:0.8%] F:2.0%,M:1.5%,n:255 | C:92.9%[S:92.3%,D:0.6%] F:3.0%,M:4.1%,n:954 | C:99.2%[S:78.8%,D:20.4%] F:0.0%,M:0.8%,n:255 | C:95.4%[S:74.5%,D:20.9%] F:0.9%,M:3.7%,n:954 | GCF_022113875.1 |
| Dendronephthya gigantea | 286.2 | 1321 | 30.08 | 1.45 | 7.80 | 28,741 | C:96.1%[S:84.7%,D:11.4%] F:2.4%,M:1.5% | C:88.7%[S:79.4%,D:9.3%] F:5.3%,M:6.0% | C:98.4%[S:74.1%,D:24.3%] F:0.4%,M:1.2% | C:95.2%[S:73.5%,D:21.7%] F:0.8%,M:4.0% | Jeon et al.76 |
| Heliopora coerulea | 429.9 | 769 | 37.4 | 1.42 | 9.92 | 27,108 | C:94.9%[S:92.2%,D:2.7%] F:3.5%,M:1.6%,n:255 | C:88.9%[S:86.2%,D:2.7%] F:5.5%,M:5.6%,n:954 | C:95.7%[S:81.2%,D:14.5%] F:2.7%,M:1.6%,n:255 | C:92.4%[S:80.0%,D:12.4%] F:2.9%,M:4.7%,n:954 | This study |
| Nematostella vectensis | 269.4 | 47 | 29.49 | 17.87 | 22.17 | 32,370 | C:97.3%[S:97.3%,D:0.0%] F:2.7%,M:0.0% | C:94.6%[S:94.1%,D:0.5%] F:2.6%,M:2.8% | C:99.2%[S:74.1%,D:25.1%] F:0.0%,M:0.8% | C:97.7%[S:73.1%,D:24.6%] F:0.4%,M:1.9% | GCF_932526225.1 |
| Aiptasia pallida | 256.1 | 4312 | 24.31 | 0.44 | 1.84 | 27,753 | C:94.9%[S:92.9%,D:2.0%] F:3.1%,M:2.0% | C:91.8%[S:89.3%,D:2.5%] F:4.3%,M:3.9% | C:96.1%[S:85.9%,D:10.2%] F:2.7%,M:1.2% | C:94.7%[S:83.5%,D:11.2%] F:2.1%,M:3.2% | GCA_001417965.1 |
| Actinia tenebrosa | 486.8 | 614 | 39.06 | 2.84 | 4.86 | 30,327 | C:93.4%[S:91.4%,D:2.0%] F:4.3%,M:2.3% | C:93.0%[S:91.4%,D:1.6%] F:3.6%,M:3.4% | C:88.6%[S:85.9%,D:2.7%] F:5.9%,M:5.5% | C:88.6%[S:87.7%,D:0.9%] F:4.8%,M:6.6% | ReefGenomics |
| Pocillopora meandrina | 376.6 | 212 | 38.03 | 10.02 | 21.65 | 31,840 | C:98.8%[S:98.0%,D:0.8%] F:0.4%,M:0.8% | C:96.1%[S:94.9%,D:1.2%] F:2.0%,M:1.9% | C:96.5%[S:96.1%,D:0.4%] F:3.1%,M:0.4% | C:96.9%[S:95.5%,D:1.4%] F:1.8%,M:1.3% | Stephens et al.77 |
| Fungia fungites | 606.3 | 7424 | 33.38 | 0.32 | 1.80 | 38,209 | C:92.2%[S:91.8%,D:0.4%] F:7.1%,M:0.7% | C:89.9%[S:89.3%,D:0.6%] F:5.8%,M:4.3% | C:86.7%[S:85.5%,D:1.2%] F:10.2%,M:3.1% | C:84.3%[S:83.0%,D:1.3%] F:9.7%,M:6.0% | ReefGenomics |
| Goniastrea aspera | 764.9 | 5396 | 35.09 | 0.52 | 2.90 | 35,901 | C:95.7%[S:95.7%,D:0.0%] F:3.5%,M:0.8% | C:93.2%[S:92.3%,D:0.9%] F:3.4%,M:3.4% | C:86.7%[S:86.3%,D:0.4%] F:9.0%,M:4.3% | C:85.4%[S:84.4%,D:1.0%] F:7.9%,M:6.7% | ReefGenomics |
| Orbicella faveolata | 485.5 | 1933 | 22.81 | 1.16 | 4.77 | 32,587 | C:85.5%[S:85.1%,D:0.4%] F:10.6%,M:3.9% | C:85.3%[S:84.6%,D:0.7%] F:8.5%,M:6.2% | C:87.4%[S:72.5%,D:14.9%] F:7.5%,M:5.1% | C:87.2%[S:72.7%,D:14.5%] F:6.6%,M:6.2% | GCF_002042975.1 |
| Porites compressa | 592.5 | 608 | 39.2 | 4.00 | 18.35 | 44,130 | C:99.2%[S:98.0%,D:1.2%] F:0.4%,M:0.4% | C:95.9%[S:93.9%,D:2.0%] F:2.0%,M:2.1% | C:96.9%[S:94.9%,D:2.0%] F:2.4%,M:0.7% | C:95.8%[S:93.4%,D:2.4%] F:2.0%,M:2.2% | Stephens et al.77 |
| Pachyseris speciosa | 984.4 | 2368 | 39.56 | 0.77 | 4.62 | 39,160 | C:95.6%[S:92.9%,D:2.7%] F:2.4%,M:2.0% | C:95.4%[S:91.8%,D:3.6%] F:1.6%,M:3.0% | C:86.7%[S:84.7%,D:2.0%] F:9.8%,M:3.5% | C:86.0%[S:83.5%,D:2.5%] F:6.4%,M:7.6% | ReefGenomics |
| Galaxea fascicularis | 334.2 | 11269 | 38.56 | 0.09 | 0.87 | 22,418 | C:88.6%[S:88.6%,D:0.0%] F:9.0%,M:2.4% | C:89.7%[S:89.3%,D:0.4%] F:5.9%,M:4.4% | C:85.5%[S:85.5%,D:0.0%] F:9.4%,M:5.1% | C:83.1%[S:82.6%,D:0.5%] F:9.0%,M:7.9% | ReefGenomics |
| Acropora digitifera | 415.8 | 956 | 38.87 | 1.86 | 7.63 | 25,278 | C:93.7%[S:92.9%,D:0.8%] F:4.3%,M:2.0% | C:92.8%[S:92.6%,D:0.2%] F:3.7%,M:3.5% | C:71.0%[S:65.1%,D:5.9%] F:18.4%,M:10.6% | C:74.6%[S:67.7%,D:6.9%] F:13.0%,M:12.4% | Shinzato et al.78 |
| Montipora capitata | 780.5 | 1699 | 39.65 | 47.72 | 48.53 | 54,384 | C:99.2%[S:98.0%,D:1.2%] F:0.0%,M:0.8% | C:95.7%[S:94.0%,D:1.7%] F:2.2%,M:2.1% | C:96.5%[S:95.3%,D:1.2%] F:3.5%,M:0.0% | C:95.2%[S:92.9%,D:2.3%] F:3.2%,M:1.6% | Stephens et al.77 |
For BUSCO score, C: number of complete BUSCOs; S: number of Complete and single-copy BUSCOs, D: number of Complete and duplicated BUSCOs, F, number of fragmented BUSCOs; M, number of missing BUSCOs.