Table 1: Metrics for simulated Nanopore read mapping to the human genome.
Minmer and minimizer-based MashMap implementations as well as Minimap2 were used to map simulated reads from the human reference genome using Pbsim Ono et al. (2013).
| Minimap2 | MashMap2 | MashMap3 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Dataset | CPU time (m) | Memory (Gb) | ME | MAE | CPU time (m) | Memory (Gb) | ME | MAE | CPU time (m) | Memory (Gb) | ME | MAE |
| ONT-99 | 154.20 | 9.89 | −0.25 | 0.34 | 80.27 | 9.92 | −0.27 | 0.29 | 33.64 | 13.07 | 0.03 | 0.17 |
| ONT-98 | 147.29 | 9.89 | −0.36 | 0.52 | 82.46 | 9.92 | −0.33 | 0.39 | 35.13 | 13.09 | 0.06 | 0.29 |
| ONT-95 | 96.35 | 9.89 | −0.46 | 0.81 | 106.81 | 9.92 | −0.25 | 0.59 | 42.81 | 13.10 | 0.21 | 0.62 |