Table 1.
Periodic gene statistics
| Threshold | Periodic gene counts | Gene intersection counts | Phase shift variance | ||||
|---|---|---|---|---|---|---|---|
| Expression |
Periodicity (human, P. vivax), % |
Human | P. vivax | Human | P. vivax | Human | P. vivax |
| 10 | (1, 3) | 74.7 (14.75) | 207.9 (14.5) | 0.95 (1) | 45.1 (37) | 1.6e-02 (1.4e-02) | 1.6e-03 (1.3e-03) |
| (3, 3) | 219.9 (57.5) | 7.9 (5) | 2.4e-02 (3.3e-02) | ||||
| (5,5) | 344.9 (68.75) | 324.3 (34.5) | 17.3 (9) | 89.5 (55) | 3.3e-02 (2.4e-02) | 1.9e-03 (1.9e-03) | |
| (10, 5) | 736.2 (263.5) | 68.8 (28) | 4.0e-02 (2.1e-02) | ||||
| 5 | (3, 3) | 325.2 (66.25) | 221.4 (10.25) | 11.6 (6) | 49.1 (27) | 3.1e-02 (2.6e-02) | 1.6e-03 (1.3e-03) |
| (5,5) | 553.5 (65.75) | 335.7 (32.5) | 30.6 (13) | 93.2 (54) | 3.7e-02 (2.1e-02) | 1.8e-03 (1.8e-03) | |
| (10, 5) | 1,036.0 (105.0) | 104.2 (37) | 4.3e-02 (2.7e-02) | ||||
| 1 | (3, 3) | 583.3 (127.0) | 223.7 (12.75) | 22.2 (11) | 49.5 (27) | 3.7e-02 (2.6e-02) | 1.7e-03 (1.6e-03) |
| (5,5) | 982.8 (201.75) | 339.5 (30.75) | 56.9 (27) | 94.1 (53) | 4.1e-02 (2.4e-02) | 1.9e-03 (1.9e-03) | |
| (10, 5) | 1,933.7 (796.0) | 207.8 (77) | 4.6e-02 (2.8e-02) | ||||
The average counts of periodic genes across participants, the average counts of the pairwise intersections across all participant pairs, and the average circular variances of pairwise phase shift estimates of periodic genes across all participant pairs with two or more overlapping genes. Interquartile ranges are given in parentheses. Periodic genes are taken to be those whose maximum expression across the time series is at least the specified expression threshold in QN TPMs and which exhibit at least the same degree of periodicity as the top X of these genes when ranked by the JTK periodicity scores. Pairs of periodicity thresholds specify those used for humans and P. vivax samples.