Table 2.
SIFT and PolyPhen-2 predicted non-synonymous SNPs
No | ID of nsSNPs | AA positions | SIFT | Score | PolyPhen-2 | Score | No | ID of nsSNPs | AA positions | SIFT | Score | PolyPhen-2 | Score |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | rs61757480 | I291T | DEL | 0.001 | Prob Dam | 1 | 26 | rs370857003 | S58F | DEL | 0 | Prob Dam | 1 |
2 | rs61741624 | V395I | DEL | 0.035 | Prob Dam | 1 | 27 | rs370665830 | Q588H | DEL | 0.007 | Prob Dam | 0.979 |
3 | rs140806973 | A336V | DEL | 0.035 | Prob Dam | 1 | 28 | rs143125991 | G25V | DEL | 0.016 | Prob Dam | 0.982 |
4 | rs80330149 | G298R | DEL | 0.004 | Prob Dam | 1 | 29 | rs146979323 | R565W | DEL | 0 | Prob Dam | 1 |
5 | rs137870001 | R270H | DEL | 0.02 | Prob Dam | 1 | 30 | rs372028526 | R248H | DEL | 0.002 | Prob Dam | 1 |
6 | rs138927279 | C567Y | DEL | 0 | Prob Dam | 1 | 31 | rs372067284 | T668M | DEL | 0.001 | Prob Dam | 1 |
7 | rs139835107 | F81L | DEL | 0.019 | BENIGN | 0.416 | 32 | rs372614431 | R817C | DEL | 0.001 | Prob Dam | 0.995 |
8 | rs140595148 | Q616H | DEL | 0 | Prob Dam | 1 | 33 | rs372664222 | R713L | DEL | 0.004 | Prob Dam | 0.998 |
9 | rs140914273 | R572H | DEL | 0.017 | Prob Dam | 1 | 34 | rs374592996 | Y148C | DEL | 0.001 | Prob Dam | 0.999 |
10 | rs141374503 | R565Q | DEL | 0.007 | Prob Dam | 1 | 35 | rs374628791 | R55L | DEL | 0.018 | BENIGN | 0.223 |
11 | rs142268705 | A370T | DEL | 0.002 | Prob Dam | 1 | 36 | rs374705972 | R435H | DEL | 0.029 | Prob Dam | 1 |
12 | rs142781084 | Q927R | DEL | 0.017 | Prob Dam | 1 | 37 | rs374267184 | I287F | DEL | 0.001 | Prob Dam | 1 |
13 | rs143059623 | Y536C | DEL | 0.003 | Prob Dam | 0.999 | 38 | rs147882384 | N98S | DEL | 0.012 | Prob Dam | 0.999 |
14 | rs144367585 | M731T | DEL | 0.009 | Possibly Dam | 0.464 | 39 | rs374979020 | R883C | DEL | 0 | Prob Dam | 1 |
15 | rs145610471 | F777L | DEL | 0.01 | Prob Dam | 0.921 | 40 | rs375640530 | Y636C | DEL | 0.011 | Prob Dam | 0.996 |
16 | rs141331151 | P371S | DEL | 0.01 | Prob Dam | 0.994 | 41 | rs375983592 | R959W | DEL | 0 | Prob Dam | 1 |
17 | rs139921635 | P513T | DEL | 0.01 | Prob Dam | 1 | 42 | rs377163219 | R576L | DEL | 0 | Prob Dam | 1 |
18 | rs149118364 | R943H | DEL | 0.03 | BENIGN | 0.067 | 43 | rs377294345 | R954H | DEL | 0.02 | Prob Dam | 1 |
19 | rs150168072 | R572C | DEL | 0.001 | Prob Dam | 1 | 44 | rs201820778 | R1053C | DEL | 0.038 | Prob Dam | 1 |
20 | rs201524333 | S1038F | DEL | 0.021 | BENIGN | 0.368 | 45 | rs374977549 | P510A | DEL | 0.054 | Prob Dam | 1 |
21 | rs202031187 | G374S | DEL | 0.005 | Prob Dam | 1 | 46 | rs200161568 | D791V | DEL | 0.021 | Prob Dam | 0.908 |
22 | rs202136117 | D815Y | DEL | 0.008 | Prob Dam | 0.767 | 47 | rs188256169 | P77T | DEL | 0.022 | BENIGN | 0.003 |
23 | rs202230275 | R94Q | DEL | 0.008 | Prob Dam | 0.897 | 48 | rs150652042 | R137W | DEL | 0.032 | BENIGN | 0 |
24 | rs367831484 | G983S | DEL | 0.02 | Prob Dam | 1 | 49 | rs150012152 | G412S | DEL | 0.02 | Prob Dam | 1 |
25 | rs368865428 | C567R | DEL | 0 | Prob Dam | 1 | 50 | rs149726955 | L801F | DEL | 0.004 | Prob Dam | 1 |
Threshold: SIFT: < 0.05 PolyPhen-2: Probably Damaging: score > 0.908; Possibly Damaging: 0.446 < score ≤ 0.908; Benign: score ≤ 0.446