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. 2023 Jun 15;24:251. doi: 10.1186/s12859-023-05361-6

Table 2.

SIFT and PolyPhen-2 predicted non-synonymous SNPs

No ID of nsSNPs AA positions SIFT Score PolyPhen-2 Score No ID of nsSNPs AA positions SIFT Score PolyPhen-2 Score
1 rs61757480 I291T DEL 0.001 Prob Dam 1 26 rs370857003 S58F DEL 0 Prob Dam 1
2 rs61741624 V395I DEL 0.035 Prob Dam 1 27 rs370665830 Q588H DEL 0.007 Prob Dam 0.979
3 rs140806973 A336V DEL 0.035 Prob Dam 1 28 rs143125991 G25V DEL 0.016 Prob Dam 0.982
4 rs80330149 G298R DEL 0.004 Prob Dam 1 29 rs146979323 R565W DEL 0 Prob Dam 1
5 rs137870001 R270H DEL 0.02 Prob Dam 1 30 rs372028526 R248H DEL 0.002 Prob Dam 1
6 rs138927279 C567Y DEL 0 Prob Dam 1 31 rs372067284 T668M DEL 0.001 Prob Dam 1
7 rs139835107 F81L DEL 0.019 BENIGN 0.416 32 rs372614431 R817C DEL 0.001 Prob Dam 0.995
8 rs140595148 Q616H DEL 0 Prob Dam 1 33 rs372664222 R713L DEL 0.004 Prob Dam 0.998
9 rs140914273 R572H DEL 0.017 Prob Dam 1 34 rs374592996 Y148C DEL 0.001 Prob Dam 0.999
10 rs141374503 R565Q DEL 0.007 Prob Dam 1 35 rs374628791 R55L DEL 0.018 BENIGN 0.223
11 rs142268705 A370T DEL 0.002 Prob Dam 1 36 rs374705972 R435H DEL 0.029 Prob Dam 1
12 rs142781084 Q927R DEL 0.017 Prob Dam 1 37 rs374267184 I287F DEL 0.001 Prob Dam 1
13 rs143059623 Y536C DEL 0.003 Prob Dam 0.999 38 rs147882384 N98S DEL 0.012 Prob Dam 0.999
14 rs144367585 M731T DEL 0.009 Possibly Dam 0.464 39 rs374979020 R883C DEL 0 Prob Dam 1
15 rs145610471 F777L DEL 0.01 Prob Dam 0.921 40 rs375640530 Y636C DEL 0.011 Prob Dam 0.996
16 rs141331151 P371S DEL 0.01 Prob Dam 0.994 41 rs375983592 R959W DEL 0 Prob Dam 1
17 rs139921635 P513T DEL 0.01 Prob Dam 1 42 rs377163219 R576L DEL 0 Prob Dam 1
18 rs149118364 R943H DEL 0.03 BENIGN 0.067 43 rs377294345 R954H DEL 0.02 Prob Dam 1
19 rs150168072 R572C DEL 0.001 Prob Dam 1 44 rs201820778 R1053C DEL 0.038 Prob Dam 1
20 rs201524333 S1038F DEL 0.021 BENIGN 0.368 45 rs374977549 P510A DEL 0.054 Prob Dam 1
21 rs202031187 G374S DEL 0.005 Prob Dam 1 46 rs200161568 D791V DEL 0.021 Prob Dam 0.908
22 rs202136117 D815Y DEL 0.008 Prob Dam 0.767 47 rs188256169 P77T DEL 0.022 BENIGN 0.003
23 rs202230275 R94Q DEL 0.008 Prob Dam 0.897 48 rs150652042 R137W DEL 0.032 BENIGN 0
24 rs367831484 G983S DEL 0.02 Prob Dam 1 49 rs150012152 G412S DEL 0.02 Prob Dam 1
25 rs368865428 C567R DEL 0 Prob Dam 1 50 rs149726955 L801F DEL 0.004 Prob Dam 1

Threshold: SIFT: < 0.05 PolyPhen-2: Probably Damaging: score > 0.908; Possibly Damaging: 0.446 < score ≤ 0.908; Benign: score ≤ 0.446