Table 2.

Virtual knockout genes and performances of 3D structure reconstructions by running topological clustering 100 times (score = accuracy + ARI)

VKO gene	Frequency	Max score	Max accuracy	Max ARI	Mean score	Mean accuracy	Mean ARI
noKO	NA	1.470	0.828	0.657	1.143	0.721	0.422
Fam64a	3	1.55	0.86	0.70	1.15	0.72	0.43
Kras	3	1.49	0.83	0.66	1.15	0.72	0.42
Ptp4a1	3	1.49	0.83	0.66	1.15	0.72	0.42
Ghitm	5	1.49	0.83	0.66	1.14	0.72	0.42
Bcam	3	1.49	0.83	0.66	1.14	0.72	0.42
Ptplb	3	1.49	0.83	0.67	1.14	0.72	0.42
Tmem246	4	1.48	0.82	0.66	1.14	0.72	0.42
Snrpg	3	1.44	0.81	0.63	1.14	0.72	0.42
Rtn4	3	1.49	0.83	0.66	1.14	0.72	0.42
Tipin	3	1.57	0.86	0.71	1.14	0.72	0.42
Ptgr2	4	1.49	0.83	0.66	1.14	0.72	0.42
Rcor2	3	1.47	0.82	0.66	1.14	0.72	0.42
Mrpl20	3	1.47	0.82	0.65	1.14	0.72	0.42
Prkcdbp	3	1.44	0.81	0.65	1.13	0.72	0.42
Fhl1	4	1.49	0.83	0.66	1.13	0.72	0.41
Cdkn1c	5	1.36	0.81	0.60	1.12	0.72	0.41
3632451O06Rik	4	1.53	0.84	0.69	1.11	0.71	0.40
Ccnd2	5	1.41	0.80	0.62	1.08	0.71	0.37
Ptma	3	1.36	0.79	0.60	1.07	0.70	0.37
Des	3	1.39	0.80	0.60	1.05	0.69	0.36
Des:Ptma	3:3	1.22	0.76	0.46	0.92	0.66	0.25
Des:Ptma:Ccnd2	3:3:5	1.24	0.77	0.49	0.97	0.67	0.30