TABLE 1.
K. pneumoniae isolates sequenced in this study and genome sequence informationa
| Strain | Isolation yr | ST | KL type | No. of contigs | Sequencing coverage | Total length (bp) | GC (%) | N 50 | Largest contig (bp) | Accession no. | Reference(s) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| H49 | 2003 | 14 | 2 | 78 | 104 | 5,590,357 | 57.32 | 350,404 | 701,584 | GCA_013504725.1 | 19, 21 |
| H1122 | 2010 | 14 | 16 | 75 | 105 | 5,576,295 | 57.21 | 399,091 | 1,013,553 | GCA_013504725.1 | 18, 19 |
| 44 | 2013 | 15 | 24 | 109 | 106 | 5,745,985 | 56.95 | 210,873 | 584,875 | GCA_013620905.1 | 19 |
| C1686* | 2012 | 15 | 24 | 130 | 112 | 6,050,103 | 56.46 | 210,874 | 472,869 | GCA_013521185.1 | 19 |
| C1693 | 2012 | 15 | 24 | 132 | 105 | 5,649,365 | 57.12 | 184,651 | 371,151 | GCA_013620925.1 | 19 |
| H1119 | 2010 | 15 | 39 | 115 | 102 | 5,529,166 | 57.26 | 162,787 | 429,762 | GCA_011090325.1 | 18, 19 |
| C1699 | 2012 | 15 | 112 | 108 | 103 | 5,580,881 | 57.05 | 220,754 | 472,869 | GCA_011065465.1 | 19 |
| C1694* | 2012 | 15 | 19 | 90 | 101 | 5,453,399 | 57.17 | 203,303 | 584,887 | GCA_013620895.1 | 19 |
| K47 | 2012 | 15 | 110 | 115 | 106 | 5,734,620 | 56.63 | 204,524 | 584,887 | GCA_013620875.1 | 19, 79 |
a
All strains were of phylogenetic group Kp1 and type O1. ST, sequence type; KL, capsular locus. Asterisks indicate strains that were closely related to strain 44 (shared <21 SNPs) and were excluded to avoid overrepresentation in the final data set (see Materials and Methods for details).