FIG 1.

Comparative genomics analyses. (a) Global alignment of X. albilineans genomes with the progressiveMauve tool. From top to bottom are the reference strains GPE PC73 and Xa-FJ1, followed by the Brazilian strains Xa04, Xa11, Xa21, and Xa26. In the image, the sequences start and end with a red vertical bar (open genomes in dnaA). The blocks with similar colors indicate the conserved regions between the genomes; the white regions within the blocks represent sequences with low global similarity, while the white and light gray regions outside the blocks represent unique sequences. (b) Genome features present in each isolate analyzed, including CRISPR regions, prophages, and insertion sequences. Features present in the genomes are marked with black squares (similar genomic context); absences are marked with white squares. IS numbering was defined by position in the genome followed by the family and group associated with the sequence (IS01 to IS3, subgroup IS407).