TABLE 1.

Isolates included in this study and relative sequencing data

Isolate ID	Date	Source	Farm	Genome sizea	N. contigs	Avg. lengthb	Largest contig lengthb	N 50	Accession no.
20069D-01-02	2019-9	Fly gut	A	634,492	37	17,148	122,725	48,510	JAJPGJ010000000
20069D-02-01	2017-3	Milk	A	476,969	602	792	6,746	1,025	n.a.c
20069D-03-04	2017-4	Milk	A	632,854	29	21,823	122,725	48,509	JAPFAS000000000
20069D-02-03	2017-9	Milk	B	835,775	155	5,392	118,305	40,685	JAPFAV000000000
20069D-03-07	2017-11	Milk	B	778,237	244	3,190	118,309	32,471	JAPFAP000000000
20069D-03-02	2020-1	Milk	C	679,184	117	5,805	124,054	36,829	JAPFAU000000000
20069D-03-03	2020-1	Milk	C	745,228	264	2,823	124,054	35,571	JAPFAT000000000
20069D-03-05	2017-6	Milk	D	979,266	726	1,349	142,985	29,222	JAPFAR000000000
20069D-03-06	2018-2	Milk	E	799,647	300	2,665	260,840	39,661	JAPFAQ000000000
20069D-03-08	2018-9	Lung tissue	F	708,223	119	5,951	100,334	30,468	JAPFAO000000000

^aSum of the lengths of the individual scaffold/contigs of each assembly.

^bLengths in base pairs.

^cSee Data Availability statement.