Table 2.
Class 1 and Class 2 integrons identified in 26 Salmonella Infantis.
| ID isolate | Source | Integrase (5’ CS) | IntFinder 1.0 | ||||
|---|---|---|---|---|---|---|---|
| Genes | Identity | Query/Template lengh | Integron name | Accesion number | |||
| 18-006979-231 | Swine | intl1 | aadA1 | 100 | 1008/1008 | In740 | JN645874 |
| 18-006979-249 | Swine | intl1 | aadA1 | 95.82 | 1194/1031 | In695 | AF327727 |
| 18-006979-283 | Cow | intl1 | ereA2 | 99.9 | 1374/1372 | Class I | AF326209 |
| 18-006979-392 | Swine | intl1 | aadA2b | 94.05 | 1010/1009 | In128 | AF221903 |
| 18-012180-313 | Swine | intl1 | ant(2″)-la | 93.56 | 767/745 | In161 | HM367610 |
| 18-012180-414 | Swine | intl1 | - | - | |||
| 18-024127-087 | Chicken | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-024127-087 | Chicken | intl2 | - | - | |||
| 18-024128-077 | Horse | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-024128-077 | Horse | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 18-024131-003 | Chicken | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-024131-003 | Chicken | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 18-024131-027 | Cow | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-024131-027 | Cow | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 18-024131-029 | Horse | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-024131-029 | Horse | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 18-038310-060 | Horse | intl1 | intl1, aadA1, aac(3)-VIa, qacΔ1, sul1, orf5 | 99.98 | 11,129/11129 | In1077 | CP009409 |
| 18-038875-022 | Chicken | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-038875-022 | Chicken | intl2 | - | - | |||
| 18-038876-065 | Chicken | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 18-038876-065 | Chicken | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 18-038877-013 | Swine | intl1 | aadA2 | 78.3 | 1009/1009 | ln128 | AF221903 |
| 18-038877-048 | Swine | intl1 | intl1, ant(2″)-la, aadA2, qacΔ1, sul1 | 100 | 4515/4515 | In1071 | KJ411925 |
| 19-021047-026 | Chicken | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 19-021047-026 | Chicken | intl2 | drfA14, lsp | 95.48 | 1084/2386 | In14 | EU780012 |
| 19-021048-003 | Swine | intl1 | - | - | |||
| 19-021048-012 | Cow | intl1 | - | - | |||
| 19-021048-033 | Swine | intl1 | intl1 | 97.19 | 55,434/55702 | In764 | JN983043 |
| 19-021048-036 | Horse | intl1 | intl1, aadA1, aac(3)-VIa, qacΔ1, sul1, orf5 | 99.98 | 11,129/11129 | In1077 | CP009409 |
| 19-021048-041 | Chicken | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 19-021048-041 | Chicken | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 19-021048-043 | Horse | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 19-021048-043 | Horse | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
| 19-021048-045 | Turkey | intl1 | aadA8 | 95.75 | 847/847 | In424 | AF326210 |
| 19-021048-050 | Swine | intl1 | intl1, aadA2, qacΔ1, sul1, orf5 | 99.98 | 4405/4405 | In531 | DQ019420 |
| 19-021048-057 | Turkey | intl1 | intl1, aadA1, qacΔ1, sul1, orf5 | 99.97 | 3926/3926 | In2 | AF071413 |
| 19-021048-057 | Turkey | intl2 | drfA14, lsp | 100 | 2386/2386 | In14 | EU780012 |
(-) not detected.