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. 2023 May 25;9(5):mgen001016. doi: 10.1099/mgen.0.001016

Fig. 7.

Fig. 7.

Heatmap showing the short-read coverage across the pOXA48a reference sequence indicates deletions among some isolates, including several involving the tra region in ST307. The plasmid coverage is shown relative to the median chromosomal coverage for 113 isolates with ≥70 % mapping to pOXA48a (GenBank accession no. JN626286) [35]. ORFs from the pOXA48a plasmid are depicted at the top, including bla OXA-48. Metadata columns indicate the host species, those belonging to frequently observed STs, and replicon and bla OXA-48-like variants identified from the isolate genomes. The far-right column indicates isolates selected for long-read sequencing to enable complete plasmid assembly.