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. 2023 May 25;9(5):mgen001020. doi: 10.1099/mgen.0.001020

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Fig. 3. — (a) CC30 global phylogeny (the divergent ST34 clade is not represented). Branches are coloured by clade: EMSSA-ST30 (orange), EMRSA-16 (blue), MRSA-ST30 (red), phage type 80/81 (aqua). Coloured nodes represent StaphNET-SA genomes, detailing number and country of origin. AR: Argentina, BO: Bolivia, BR: Brazil, PY: Paraguay, UY: Uruguay. Project is available in microreact: https://microreact.org/project/cc30-global-context. (b) Detailed ST30 phylogeny including 61 genomes from our collection. Outgroup-rooted phylogenetic tree inferred from 61 666 SNP sites obtained after mapping the genomes to the complete genome of strain TCH60 and masking regions of recombination and MGEs. Leaf nodes are coloured by collection: StaphNET-SA (violet), global context (grey). Coloured blocks represent the presence of an intact genetic determinant (purple) or feature as described in the key. For both trees, bars represent the number of SNPs per variable site. Project is available in microreact: https://microreact.org/project/emrsa-st30-global-context.