Table 2:
CHRc | GENE | SNPsd | Minor allele | MAF | RERI | 95% LLe | 95% ULf | P value | FDRg RERI | ROR | 95% LL | 95% UL | P value | FDR ROR | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6 | ALDH5A1 | rs3765311 | G | 0.48 | 0.62 | 0.17 | 1.06 | 0.0071 | 0.0154 | 2.13 | 1.05 | 4.33 | 0.0366 | 0.0401 | |
7 | CNTNAP2 | rs11771882 | T | 0.04 | −2.70 | −5.77 | 0.37 | 0.0848 | 0.0937 | 0.17 | 0.04 | 0.64 | 0.0092 | 0.0147 | |
rs12703756 | G | 0.05 | 1.44 | 0.00 | 2.88 | 0.0508 | 0.0614 | 4.40 | 1.46 | 13.23 | 0.0083 | 0.0147 | |||
rs700316 | A | 0.21 | 0.86 | 0.30 | 1.41 | 0.0024 | 0.0089 | 2.69 | 1.38 | 5.21 | 0.0035 | 0.0140 | |||
rs75454072 | T | 0.07 | −1.95 | −3.86 | −0.05 | 0.0444 | 0.0542 | 0.27 | 0.11 | 0.70 | 0.0067 | 0.0145 | |||
4 | EGF | rs11569014 | A | 0.02 | 9.27 | −10.97 | 29.50 | 0.3695 | 0.3695 | 23.07 | 2.29 | 232.53 | 0.0078 | 0.0146 | |
rs2298991 | G | 0.47 | 0.59 | 0.15 | 1.03 | 0.0092 | 0.0169 | 2.08 | 1.03 | 4.17 | 0.0400 | 0.0427 | |||
rs6533489 | G | 0.43 | 0.69 | 0.30 | 1.08 | 0.0005 | 0.0031 | 2.47 | 1.27 | 4.80 | 0.0075 | 0.0145 | |||
rs6845765 | T | 0.26 | 0.79 | 0.28 | 1.31 | 0.0025 | 0.0089 | 2.40 | 1.27 | 4.53 | 0.0067 | 0.0145 | |||
rs9030 | G | 0.36 | 0.71 | 0.25 | 1.17 | 0.0026 | 0.0089 | 2.27 | 1.20 | 4.31 | 0.0119 | 0.0177 | |||
rs9990430 | T | 0.41 | 0.74 | 0.35 | 1.13 | 0.0002 | 0.0015 | 2.64 | 1.37 | 5.09 | 0.0037 | 0.0140 | |||
6 | GABBR1 | rs28359976 | G | 0.10 | 0.88 | 0.14 | 1.63 | 0.0201 | 0.0307 | 2.99 | 1.30 | 6.85 | 0.0097 | 0.0148 | |
rs29262 | G | 0.09 | 0.90 | 0.13 | 1.67 | 0.0214 | 0.0319 | 3.07 | 1.32 | 7.13 | 0.0091 | 0.0147 | |||
rs3025626 | A | 0.10 | 0.90 | 0.14 | 1.67 | 0.0204 | 0.0307 | 3.06 | 1.32 | 7.06 | 0.0088 | 0.0147 | |||
10 | GLRX3 | rs650161 | A | 0.40 | 0.62 | 0.27 | 0.97 | 0.0005 | 0.0031 | 2.44 | 1.25 | 4.74 | 0.0088 | 0.0147 | |
rs7085125 | C | 0.38 | 0.63 | 0.20 | 1.05 | 0.0041 | 0.0112 | 2.17 | 1.13 | 4.15 | 0.0202 | 0.0254 | |||
rs7904125 | C | 0.43 | 0.68 | 0.18 | 1.19 | 0.0081 | 0.0160 | 2.13 | 1.07 | 4.25 | 0.0314 | 0.0361 | |||
6 | HCP5 | rs3094604 | G | 0.14 | −1.22 | −2.34 | −0.09 | 0.0345 | 0.0449 | 0.38 | 0.19 | 0.79 | 0.0096 | 0.0148 | |
6 | HLA-C * HLA-B | rs2442727 | A | 0.12 | −1.13 | −2.14 | −0.13 | 0.0266 | 0.0385 | 0.35 | 0.17 | 0.73 | 0.0054 | 0.0140 | |
rs2524067 | G | 0.15 | −1.12 | −2.11 | −0.14 | 0.0253 | 0.0371 | 0.36 | 0.18 | 0.74 | 0.0050 | 0.0140 | |||
rs4469339 | A | 0.41 | 0.64 | 0.23 | 1.05 | 0.0022 | 0.0089 | 2.29 | 1.16 | 4.49 | 0.0165 | 0.0217 | |||
rs4992474 | T | 0.35 | −1.36 | −2.58 | −0.14 | 0.0283 | 0.0400 | 0.38 | 0.20 | 0.71 | 0.0028 | 0.0134 | |||
rs73728881 | C | 0.35 | −1.17 | −2.29 | −0.05 | 0.0415 | 0.0512 | 0.42 | 0.22 | 0.79 | 0.0073 | 0.0145 | |||
6 | HLA-F | rs3116807 | A | 0.44 | −1.27 | −2.58 | 0.05 | 0.0589 | 0.0677 | 0.41 | 0.21 | 0.81 | 0.0098 | 0.0148 | |
5 | HTR1A | rs1402912 | A | 0.25 | 0.72 | 0.26 | 1.17 | 0.0021 | 0.0089 | 2.39 | 1.26 | 4.53 | 0.0074 | 0.0145 | |
rs173689 | T | 0.49 | 0.66 | 0.20 | 1.13 | 0.0052 | 0.0131 | 2.22 | 1.07 | 4.62 | 0.0323 | 0.0364 | |||
rs347664 | G | 0.47 | 0.71 | 0.25 | 1.18 | 0.0025 | 0.0089 | 2.33 | 1.13 | 4.78 | 0.0215 | 0.0269 | |||
rs6861297 | G | 0.10 | −1.42 | −2.72 | −0.12 | 0.0319 | 0.0436 | 0.31 | 0.14 | 0.71 | 0.0057 | 0.0140 | |||
rs72758792 | G | 0.19 | −1.26 | −2.31 | −0.21 | 0.0185 | 0.0293 | 0.35 | 0.18 | 0.69 | 0.0023 | 0.0128 | |||
6 | HTR1B | rs10943542 | T | 0.14 | 0.97 | 0.28 | 1.66 | 0.0056 | 0.0136 | 3.09 | 1.47 | 6.49 | 0.0029 | 0.0134 | |
rs1335430 | G | 0.24 | 0.59 | 0.22 | 0.95 | 0.0017 | 0.0086 | 2.39 | 1.26 | 4.53 | 0.0075 | 0.0145 | |||
rs236852 | A | 0.50 | 0.60 | 0.21 | 1.00 | 0.0029 | 0.0096 | 2.24 | 1.08 | 4.65 | 0.0297 | 0.0352 | |||
rs3004002 | A | 0.41 | 0.81 | 0.47 | 1.16 | 0.0000 | 0.0001 | 3.17 | 1.61 | 6.24 | 0.0009 | 0.0128 | |||
rs4075570 | G | 0.37 | 0.72 | 0.24 | 1.20 | 0.0033 | 0.0105 | 2.25 | 1.17 | 4.33 | 0.0149 | 0.0208 | |||
rs4708281 | G | 0.31 | 0.49 | 0.12 | 0.87 | 0.0102 | 0.0175 | 1.99 | 1.05 | 3.77 | 0.0356 | 0.0393 | |||
rs58693007 | T | 0.20 | 0.70 | 0.24 | 1.15 | 0.0026 | 0.0089 | 2.53 | 1.30 | 4.92 | 0.0060 | 0.0142 | |||
rs62426461 | G | 0.13 | 0.85 | 0.23 | 1.47 | 0.0073 | 0.0155 | 2.85 | 1.35 | 6.00 | 0.0060 | 0.0142 | |||
rs62433374 | A | 0.39 | 0.70 | 0.33 | 1.06 | 0.0002 | 0.0015 | 2.57 | 1.33 | 4.96 | 0.0048 | 0.0140 | |||
rs75278569 | G | 0.16 | 0.94 | 0.39 | 1.49 | 0.0008 | 0.0046 | 3.37 | 1.66 | 6.85 | 0.0008 | 0.0128 | |||
rs7764654 | C | 0.38 | 0.60 | 0.15 | 1.06 | 0.0096 | 0.0169 | 2.04 | 1.06 | 3.90 | 0.0317 | 0.0361 | |||
rs7771755 | T | 0.48 | 0.59 | 0.15 | 1.02 | 0.0079 | 0.0159 | 2.11 | 1.02 | 4.39 | 0.0448 | 0.0460 | |||
rs77723474 | C | 0.03 | 2.28 | −0.39 | 4.94 | 0.0938 | 0.0980 | 7.63 | 1.84 | 31.63 | 0.0051 | 0.0140 | |||
3 | HTR1F | rs114838037 | G | 0.02 | 4.32 | −1.66 | 10.31 | 0.1568 | 0.1596 | 13.05 | 2.05 | 83.24 | 0.0066 | 0.0145 | |
rs76107227 | C | 0.02 | 4.44 | −2.62 | 11.49 | 0.2178 | 0.2197 | 16.31 | 2.31 | 115.28 | 0.0051 | 0.0140 | |||
13 | HTR2A | rs1172402 | C | 0.18 | −1.16 | −2.22 | −0.09 | 0.0331 | 0.0436 | 0.38 | 0.19 | 0.77 | 0.0069 | 0.0145 | |
rs1928045 | C | 0.46 | 0.59 | 0.17 | 1.01 | 0.0061 | 0.0144 | 2.11 | 1.05 | 4.22 | 0.0348 | 0.0389 | |||
rs2149436 | C | 0.42 | 0.67 | 0.24 | 1.09 | 0.0020 | 0.0089 | 2.31 | 1.17 | 4.55 | 0.0162 | 0.0216 | |||
rs4942590 | C | 0.34 | 0.68 | 0.22 | 1.14 | 0.0035 | 0.0108 | 2.23 | 1.18 | 4.22 | 0.0139 | 0.0199 | |||
rs6311 | T | 0.41 | 0.56 | 0.17 | 0.96 | 0.0053 | 0.0131 | 2.10 | 1.07 | 4.12 | 0.0315 | 0.0361 | |||
rs73193067 | A | 0.14 | −1.59 | −3.05 | −0.13 | 0.0324 | 0.0436 | 0.35 | 0.16 | 0.73 | 0.0056 | 0.0140 | |||
rs9526307 | A | 0.50 | 0.61 | 0.16 | 1.05 | 0.0074 | 0.0155 | 2.15 | 1.04 | 4.47 | 0.0396 | 0.0427 | |||
5 | HTR4 | rs11956922 | A | 0.47 | 0.58 | 0.13 | 1.03 | 0.0115 | 0.0191 | 2.03 | 1.00 | 4.11 | 0.0498 | 0.0502 | |
rs6580550 | T | 0.47 | 0.54 | 0.11 | 0.98 | 0.0143 | 0.0234 | ||||||||
10 | HTR7 | rs1001064 | G | 0.38 | 0.75 | 0.34 | 1.17 | 0.0004 | 0.0030 | 2.56 | 1.33 | 4.90 | 0.0048 | 0.0140 | |
rs1326843 | G | 0.20 | 0.80 | 0.29 | 1.31 | 0.0021 | 0.0089 | 2.61 | 1.34 | 5.06 | 0.0047 | 0.0140 | |||
rs17092874 | C | 0.15 | −1.39 | −2.57 | −0.22 | 0.0197 | 0.0305 | 0.32 | 0.16 | 0.67 | 0.0022 | 0.0128 | |||
12 | IFNG | rs10784678 | C | 0.38 | 0.62 | 0.19 | 1.06 | 0.0052 | 0.0131 | 2.13 | 1.11 | 4.05 | 0.0220 | 0.0272 | |
1 | IL10 | rs79707006 | G | 0.07 | −1.69 | −3.26 | −0.12 | 0.0353 | 0.0450 | 0.24 | 0.09 | 0.62 | 0.0033 | 0.0140 | |
3 | IL12A | rs12491474 | G | 0.07 | −1.95 | −3.73 | −0.16 | 0.0323 | 0.0436 | 0.22 | 0.08 | 0.59 | 0.0028 | 0.0134 | |
rs2647929 | T | 0.42 | 0.58 | 0.16 | 0.99 | 0.0064 | 0.0146 | 2.08 | 1.07 | 4.06 | 0.0315 | 0.0361 | |||
2 | IL1B | rs10169916 | T | 0.39 | 0.76 | 0.40 | 1.12 | 0.0000 | 0.0005 | 2.86 | 1.48 | 5.53 | 0.0017 | 0.0128 | |
rs1143623 | G | 0.31 | 0.66 | 0.21 | 1.10 | 0.0039 | 0.0112 | 2.21 | 1.17 | 4.16 | 0.0142 | 0.0201 | |||
rs1143633 | T | 0.34 | −1.38 | −2.65 | −0.11 | 0.0327 | 0.0436 | 0.40 | 0.21 | 0.75 | 0.0046 | 0.0140 | |||
rs115821385 | A | 0.06 | −1.67 | −3.37 | 0.03 | 0.0538 | 0.0631 | 0.23 | 0.08 | 0.64 | 0.0046 | 0.0140 | |||
rs11690539 | A | 0.35 | 0.78 | 0.40 | 1.17 | 0.0001 | 0.0008 | 2.81 | 1.49 | 5.33 | 0.0015 | 0.0128 | |||
rs16944 | A | 0.39 | 0.73 | 0.38 | 1.09 | 0.0001 | 0.0007 | 2.77 | 1.43 | 5.36 | 0.0026 | 0.0134 | |||
rs2466446 | C | 0.39 | 0.74 | 0.40 | 1.09 | 0.0000 | 0.0005 | 2.86 | 1.47 | 5.53 | 0.0019 | 0.0128 | |||
rs2723152 | T | 0.32 | 0.70 | 0.30 | 1.11 | 0.0007 | 0.0041 | 2.47 | 1.31 | 4.65 | 0.0052 | 0.0140 | |||
2 | IL1RN | rs17669228 | T | 0.18 | −1.26 | −2.37 | −0.14 | 0.0270 | 0.0386 | 0.37 | 0.19 | 0.73 | 0.0044 | 0.0140 | |
rs2592346 | G | 0.44 | 0.61 | 0.27 | 0.95 | 0.0005 | 0.0031 | 2.44 | 1.21 | 4.90 | 0.0125 | 0.0184 | |||
8 | NAT1 | rs1024363 | T | 0.27 | 0.71 | 0.19 | 1.24 | 0.0075 | 0.0155 | 2.19 | 1.16 | 4.14 | 0.0160 | 0.0215 | |
rs60962775 | T | 0.10 | −1.58 | −3.19 | 0.02 | 0.0532 | 0.0629 | 0.32 | 0.14 | 0.76 | 0.0090 | 0.0147 | |||
rs6586711 | C | 0.31 | 0.66 | 0.20 | 1.12 | 0.0046 | 0.0121 | 2.19 | 1.16 | 4.13 | 0.0156 | 0.0214 | |||
8 | NAT2 | rs6998188 | C | 0.49 | 0.62 | 0.16 | 1.09 | 0.0085 | 0.0165 | 2.12 | 1.03 | 4.34 | 0.0408 | 0.0431 | |
7 | PON1 | rs1157745 | T | 0.38 | 0.80 | 0.47 | 1.14 | 0.0000 | 0.0001 | 3.20 | 1.66 | 6.18 | 0.0005 | 0.0128 | |
rs2074351 | A | 0.30 | 0.83 | 0.41 | 1.26 | 0.0001 | 0.0011 | 2.82 | 1.49 | 5.31 | 0.0014 | 0.0128 | |||
rs2237580 | G | 0.13 | 1.01 | 0.34 | 1.67 | 0.0031 | 0.0100 | 3.14 | 1.50 | 6.57 | 0.0023 | 0.0128 | |||
rs2299256 | A | 0.27 | 0.85 | 0.45 | 1.26 | 0.0000 | 0.0006 | 3.11 | 1.63 | 5.93 | 0.0006 | 0.0128 | |||
rs2299257 | C | 0.44 | 0.83 | 0.46 | 1.20 | 0.0000 | 0.0003 | 3.12 | 1.56 | 6.24 | 0.0012 | 0.0128 | |||
rs35339934 | A | 0.13 | 0.71 | 0.25 | 1.18 | 0.0025 | 0.0089 | 3.00 | 1.43 | 6.28 | 0.0035 | 0.0140 | |||
rs3917498 | T | 0.41 | 0.81 | 0.45 | 1.18 | 0.0000 | 0.0003 | 3.07 | 1.54 | 6.11 | 0.0014 | 0.0128 | |||
rs3917577 | C | 0.13 | 0.99 | 0.32 | 1.67 | 0.0040 | 0.0112 | 3.03 | 1.45 | 6.31 | 0.0031 | 0.0140 | |||
rs662 | C | 0.38 | 0.81 | 0.48 | 1.14 | 0.0000 | 0.0001 | 3.24 | 1.68 | 6.26 | 0.0004 | 0.0128 | |||
rs854555 | A | 0.39 | 0.61 | 0.22 | 0.99 | 0.0021 | 0.0089 | 2.23 | 1.16 | 4.31 | 0.0166 | 0.0217 | |||
6 | PSMB9 | rs10214759 | T | 0.03 | 1.77 | −0.11 | 3.65 | 0.0652 | 0.0741 | 8.47 | 1.80 | 39.80 | 0.0068 | 0.0145 | |
rs17220241 | T | 0.03 | 2.05 | −0.32 | 4.43 | 0.0897 | 0.0973 | 8.64 | 1.73 | 43.26 | 0.0087 | 0.0147 | |||
rs56672687 | T | 0.03 | 1.96 | −0.14 | 4.06 | 0.0669 | 0.0753 | 8.32 | 1.75 | 39.58 | 0.0078 | 0.0146 | |||
rs73412927 | A | 0.03 | 1.88 | −0.14 | 3.90 | 0.0683 | 0.0761 | 7.99 | 1.68 | 37.96 | 0.0090 | 0.0147 | |||
7 | RELN | rs34566446 | G | 0.46 | 0.54 | 0.13 | 0.94 | 0.0089 | 0.0169 | 2.05 | 1.02 | 4.12 | 0.0447 | 0.0460 | |
rs56041591 | T | 0.06 | 2.90 | −0.60 | 6.40 | 0.1046 | 0.1084 | 5.52 | 1.68 | 18.13 | 0.0049 | 0.0140 | |||
rs671372 | T | 0.46 | 0.61 | 0.27 | 0.95 | 0.0005 | 0.0031 | 2.47 | 1.21 | 5.05 | 0.0129 | 0.0187 | |||
rs6954835 | G | 0.47 | 0.56 | 0.18 | 0.94 | 0.0038 | 0.0112 | 2.21 | 1.04 | 4.73 | 0.0401 | 0.0427 | |||
15 | RORA | rs1523526 | C | 0.48 | 0.53 | 0.14 | 0.92 | 0.0077 | 0.0156 | 2.09 | 1.02 | 4.29 | 0.0452 | 0.0460 | |
rs16944364 | G | 0.08 | 1.18 | 0.29 | 2.07 | 0.0096 | 0.0169 | 4.00 | 1.65 | 9.73 | 0.0022 | 0.0128 | |||
rs2143 | A | 0.50 | −2.05 | −3.99 | −0.12 | 0.0377 | 0.0473 | 0.28 | 0.13 | 0.60 | 0.0010 | 0.0128 | |||
rs2414708 | G | 0.24 | −1.25 | −2.37 | −0.12 | 0.0297 | 0.0415 | 0.40 | 0.21 | 0.77 | 0.0055 | 0.0140 | |||
rs4775287 | C | 0.34 | 0.60 | 0.15 | 1.05 | 0.0094 | 0.0169 | 2.03 | 1.07 | 3.85 | 0.0297 | 0.0352 | |||
rs58306294 | T | 0.25 | 0.69 | 0.17 | 1.22 | 0.0093 | 0.0169 | 2.14 | 1.13 | 4.06 | 0.0197 | 0.0252 | |||
rs67288758 | G | 0.05 | −2.17 | −4.40 | 0.06 | 0.0568 | 0.0659 | 0.14 | 0.04 | 0.46 | 0.0011 | 0.0128 | |||
rs7168305 | A | 0.08 | 1.03 | 0.24 | 1.82 | 0.0107 | 0.0180 | 4.22 | 1.67 | 10.68 | 0.0023 | 0.0128 | |||
rs72750685 | T | 0.05 | −2.06 | −4.46 | 0.34 | 0.0929 | 0.0980 | 0.21 | 0.07 | 0.68 | 0.0092 | 0.0147 | |||
rs75885569 | T | 0.03 | 2.11 | −0.61 | 4.84 | 0.1287 | 0.1322 | 8.14 | 1.72 | 38.63 | 0.0083 | 0.0147 | |||
rs75941956 | C | 0.04 | 2.46 | −0.36 | 5.28 | 0.0870 | 0.0952 | 7.62 | 1.90 | 30.54 | 0.0041 | 0.0140 | |||
6 | SOD2 | rs117664822 | A | 0.04 | −1.99 | −4.31 | 0.32 | 0.0912 | 0.0980 | 0.17 | 0.05 | 0.64 | 0.0083 | 0.0147 | |
rs4632918 | A | 0.34 | −1.22 | −2.37 | −0.07 | 0.0380 | 0.0473 | 0.42 | 0.22 | 0.79 | 0.0074 | 0.0145 | |||
rs6919792 | G | 0.33 | 0.64 | 0.20 | 1.08 | 0.0046 | 0.0121 | 2.16 | 1.15 | 4.07 | 0.0173 | 0.0224 | |||
7 | ST7 * WNT2 | rs38911 | A | 0.46 | 0.68 | 0.34 | 1.02 | 0.0001 | 0.0011 | 2.67 | 1.32 | 5.38 | 0.0061 | 0.0142 | |
6 | TAP1 * PSMB9 | rs17213826 | T | 0.04 | 1.51 | −0.02 | 3.03 | 0.0524 | 0.0627 | 5.90 | 1.53 | 22.66 | 0.0098 | 0.0148 | |
6 | TAP2 | rs3819721 | A | 0.24 | 0.60 | 0.17 | 1.02 | 0.0062 | 0.0144 | 2.20 | 1.16 | 4.19 | 0.0157 | 0.0214 | |
rs73410785 | C | 0.03 | 2.63 | −0.44 | 5.69 | 0.0933 | 0.0980 | 14.01 | 2.77 | 70.82 | 0.0014 | 0.0128 | |||
1 | TGFB2 | rs12119526 | T | 0.14 | −1.42 | −2.61 | −0.24 | 0.0188 | 0.0295 | 0.32 | 0.15 | 0.66 | 0.0020 | 0.0128 | |
rs1473527 | A | 0.36 | 0.58 | 0.16 | 1.00 | 0.0071 | 0.0154 | 2.06 | 1.08 | 3.93 | 0.0283 | 0.0342 | |||
rs41313742 | T | 0.07 | 1.80 | 0.13 | 3.47 | 0.0348 | 0.0449 | 4.05 | 1.53 | 10.72 | 0.0048 | 0.0140 | |||
rs682483 | A | 0.48 | 0.54 | 0.13 | 0.95 | 0.0100 | 0.0174 | 2.03 | 1.02 | 4.06 | 0.0450 | 0.0460 | |||
rs878394 | A | 0.48 | 0.61 | 0.24 | 0.99 | 0.0015 | 0.0077 | 2.34 | 1.12 | 4.86 | 0.0229 | 0.0279 | |||
6 | VEGFA | rs62401175 | G | 0.16 | −1.97 | −3.57 | −0.36 | 0.0161 | 0.0260 | 0.29 | 0.14 | 0.60 | 0.0008 | 0.0128 |
RERI = relative excess risk for interaction
ROR= ratio odds ratio
CHR-= chromosome
SNPs=single nucleotide polymorphisms
95% LL – 95% confidence interval lower limit
95% UL = 95% confidence interval upper limit
FDR= false discovery rate corrected p-value