Table 2.
Chromosomal location of putative sweep regions and numbers of outliers and candidate genes identified in groups of cultivated rye accessions
| Germplasm group/parameter | Chromosome | Total | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 1R | 2R | 3R | 4R | 5R | 6R | 7R | Un | |||
| g1 | sweeps | 1 | 2 | 3 | ||||||
| outliers | 1 | 2 (1 + 1)a | 3 | |||||||
| candidate genes | 4 | 21 (10 + 11)a | 25 | |||||||
| g2 | sweeps | 1 | 1 | 2 | ||||||
| outliers | 8 | 1 | 9 | |||||||
| candidate genes | 6 | 14 | 20 | |||||||
| g3 | sweeps | 1 | 1 | 1 | 1 | 4 | ||||
| outliers | 1 | 8 | 2 | 1 | 12 | |||||
| candidate genes | 9 | 10 | 26 | 0 | 45 | |||||
| g4 | sweeps | 1 | 1 | 2 | ||||||
| outliers | 23 | 29 | 52 | |||||||
| candidate genes | 23 | 28 | 51 | |||||||
| g4a | sweeps | 1 | 1 | |||||||
| outliers | 13 | 13 | ||||||||
| candidate genes | 15 | 15 | ||||||||
| g4b | sweeps | 1 | 1 | |||||||
| outliers | 44 | 44 | ||||||||
| candidate genes | 14 | 14 | ||||||||
| Total | sweeps | 2 | 1 | 1 | 0 | 3 | 1 | 4 | 1 | 13 |
| outliers | 52 | 1 | 8 | 0 | 16 | 23 | 32 | 1 | 133 | |
| candidate genes | 20 | 9 | 10 | 0 | 45 | 23 | 63 | 0 | 170 | |
anumbers in brackets indicate the number of outliers/candidate genes in each of the respective sweeps