Table 2.
Pangenomic estimation of human nasal-associated Corynebacterium species based on three different platforms.
| Platform Species | Pangenome size (GCs) | % Core GCs/pangenome | % Accessory GCs/pangenome |
|---|---|---|---|
| GET HOMOLOGUES a | |||
| C. propinquum | 3777 | 43% | 57% |
| C. pseudodiphtheriticum c | 4590 | 33% | 67% |
| C. accolens d | 4220 | 40% | 60% |
| C. tuberculostearicum | 3232 | 56% | 44% |
| anvi’o | |||
| C. propinquum | 3108 | 59% | 40% |
| C. pseudodiphtheriticum | 3590 | 48% | 51% |
| C. accolens | 3427 | 57% | 42% |
| C. tuberculostearicum | 2907 | 66% | 32% |
| PPanGGOLiN | % Persistent | ||
| C. propinquum | b | 63% | 37% |
| C. pseudodiphtheriticum | b | 49% | 51% |
| C. accolens | b | 59% | 41% |
| C. tuberculostearicum | b | 69% | 31% |
a
GET_HOMOLOGUES pangenome size, % core, and % accessory are from the consensus of OMCL and COGS algorithms.
b
Pangenome size was estimated in anvi’o then the GCs imported into PPanGGOLiN to estimate persistent vs. accessory genome percentages.
c
Cps_090104 was removed from dataset only for this analysis due to an aberrant % core lower bound.
d
Cac_ATCC_49756 was removed from dataset only for this analysis due to an aberrant % core lower bound.