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. 2023 Jun 2;33(3):178–192. doi: 10.1089/nat.2022.0066

Table 1.

Summary of DNAzyme Chemical Modifications, Indicating Advantages and Disadvantages of Each

Chemical modification Advantage Disadvantage References
3′-inverted dT Improved stability
Does not disrupt catalytic function
Can improve cleavage
Relatively short half-life [1,40–43]
Phosphorothioate (PS) Improved stability
Increases cellular uptake
Decrease substrate affinity
Toxic side effects
[1,36,42,44–49]
2′-O-methyl (2′-O-Me) Improved stability
Can be incorporated into core
Reduced cleavage ability [37,38]
Locked nucleic acid (LNA) Improved base pairing selectivity and efficiency
Reduced sequence length
Improved stability
Improves binding to highly structured RNAs
Inflexible/rigid structure
Reduced cleavage ability
Reduced multiple turnover
[1,37,50–52]
2′-O-(N-(aminoethyl)carbamoyl) methyl Improved catalytic function   [53–56]
2′-deoxyadenosine analogues Improved catalytic function   [57]
2′deoxyuridine derivative containing a guanidinium group Reduced negative charge (increased cellular uptake) May reduce catalytic ability [58]
Phosphorodiamidate morpholino oligonucleotides (PMO) Improved stability
Excellent safety profile
Has not been applied to DNAzymes
May lower catalytic ability
Reduced binding affinity
[59]
2′-fluoroarabino nucleic acid (FANA) and α-l-threofuranosyl nucleic acid backbone (XNA) Improved catalytic function
Improved stability
Allele specificity
  [60,61]