Table 3.
The t test between two alleles of all SNPs associated with traits in two environments.
| Environment | t test | Trait | Classic | Grid | Hubert | Locantore | Proj |
|---|---|---|---|---|---|---|---|
| Well-watered | Significance | SW | 13 (68.4) | 16 (76.2) | 26 (87.7) | 12 (70.6) | 18 (66.7) |
| GN | 34 (89.5) | 30 (85.7) | 32 (94.1) | 35 (92.1) | 35 (97.2) | ||
| TKW | 42 (95.5) | 39 (90.7) | 35 (94.6) | 46 (95.8) | 39 (95.1) | ||
| GY | 11 (61.1) | 17 (77.3) | 26 (83.9) | 12 (63.2) | 11 (61.1) | ||
| SIL | 62 (95.4) | 58 (96.7) | 55 (96.5) | 63 (95.5) | 63 (92.6) | ||
| Non-significance | SW | 6 (31.6) | 5 (23.8) | 4 (13.3) | 5 (29.4) | 9 (33.3) | |
| GN | 4 (10.5) | 5 (14.3) | 2 (5.88) | 3 (7.89) | 1 (2.78) | ||
| TKW | 2 (4.55) | 4 (9.30) | 2 (5.41) | 2 (4.17) | 2 (4.88) | ||
| GY | 7 (38.9) | 5 (22.7) | 5 (16.1) | 7 (36.8) | 7 (38.9) | ||
| SIL | 3 (4.62) | 2 (3.33) | 2 (3.51) | 3 (4.55) | 5 (7.35) | ||
| Rain-fed | Significance | SW | 10 (55.6) | 5 (45.5) | 28 (84.8) | 9 (50.0) | 16 (72.7) |
| GN | 14 (60.9) | 13 (61.9) | 12 (60) | 15 (62.5) | 13 (68.4) | ||
| TKW | 31 (96.9) | 26 (96.3) | 29 (100) | 28 (96.6) | 34 (94.4) | ||
| GY | 10 (76.9) | 6 (50.0) | 17 (85.0) | 10 (76.9) | 13 (76.5) | ||
| SIL | 34 (64.2) | 40 (69.0) | 36 (69.2) | 37 (63.8) | 36 (70.6) | ||
| Non-significance | SW | 8 (44.4) | 6 (54.5) | 5 (15.2) | 9 (50.0) | 6 (27.3) | |
| GN | 9 (39.1) | 8 (38.1) | 8 (40.0) | 9 (37.5) | 6 (31.6) | ||
| TKW | 1 (3.1) | 1 (3.7) | 0 (0) | 1 (3.5) | 2 (5.6) | ||
| GY | 3 (23.1) | 6 (50.0) | 3 (15.0) | 3 (23.1) | 4 (23.5) | ||
| SIL | 19 (35.8) | 18 (31.0) | 16 (30.8) | 21 (36.2) | 15 (29.4) |
SW Spike weight, GN Grain number, GY Grain yield, TKW Thousand kernel weight, SIL Spike internode length.