Table 3.
Loci for oil content in 320 soybean accessions by association analysis.
| Loci | Chromosome | Interval | Environment | p-value | R2 | Favorable allele | Effect | Reference | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Start (Mb) | End (Mb) | Lower | Higher | Lower | Higher | ||||||
| qOC1.1 | 1 | 10.9 | 13.6 | E2 | 2.5E-08 | 9.9E-07 | 9.0% | 11.8% | G | –7.6–1.2 | |
| qOC1.2 | 1 | 37.0 | 37.9 | E3, E4, E3, E2 | 1.1E-10 | 2.0E-07 | 10.2% | 15.5% | G | 3.6–9.8 | |
| qOC2.1 | 2 | 31.8 | 33.5 | E6, E3, E4 | 7.6E-07 | 5.4E-08 | 9.2% | 11.0% | G | 2.5–7.9 | |
| qOC2.2 | 2 | 44.7 | 49.2 | E2 | 9.5E-07 | 1.1E-07 | 9.0% | 10.5% | G | 3.9–11.2 | Zhang et al. (2019) |
| qOC3.1 | 3 | 11.2 | 11.7 | E2 | 9.8E-07 | 6.6E-07 | 9.1% | 9.3% | A | 3.2–9.6 | |
| qOC4.1 | 4 | 41.3 | 45.3 | E2, E4, E3 | 5.2E-07 | 1.5E-10 | 9.8% | 15.5% | A | 2.1–8.9 | |
| qOC5.1 | 5 | 46.8 | 47.7 | E4, E5 | 3.7E-07 | 3.2E-07 | 9.7% | 9.9% | G | 2.0–7.8 | |
| qOC6.1 | 6 | 9.6 | 10.4 | E4, E3, E2 | 4.5E-07 | 6.0E-09 | 9.6% | 12.5% | A | –9.5–2.3 | Zhang et al. (2019) |
| qOC6.2 | 6 | 19.6 | 20.1 | E2, E5, E3, E4 | 6.1E-05 | 2.4E-09 | 6.2% | 13.3% | G | 3.2–5.9 | Hyten et al. (2004); Diers et al. (1992); Zhang et al. (2021) |
| qOC7.1 | 7 | 11.7 | 15.6 | E2, E3, E4 | 8.7E-07 | 8.9E-11 | 9.1% | 15.5% | G | 2.1–9.5 | Li et al. (2019) |
| qOC7.2 | 7 | 28.7 | 30.9 | E3, E4, E2 | 4.9E-07 | 3.2E-07 | 9.5% | 10.1% | G | 5.9–7.9 | |
| qOC8.1 | 8 | 8.3 | 8.4 | E6, E2, E5 | 5.3E-04 | 2.2E-05 | 5.1% | 7.0% | A | 3.1–8.8 | Zhang et al. (2021); Lu et al. (2013); Pathan et al. (2013) |
| qOC10.1 | 10 | 28.5 | 31.4 | E3, E5, E4 | 2.7E-07 | 9.2E-11 | 9.9% | 15.5% | G | –6.9–2.3 | |
| qOC11.1 | 11 | 8.5 | 11.0 | E3, E4, E2, E6 | 9.1E-11 | 2.7E-07 | 10.1% | 15.3% | G | 3.6–8.8 | |
| qOC11.2 | 11 | 26.0 | 29.8 | E3, E2, | 8.0E-08 | 3.9E-07 | 9.6% | 11.0% | G | 4.2–8.8 | |
| qOC12.1 | 12 | 2.1 | 7.4 | E6, E2, E3, E4 | 1.1E-10 | 7.4E-07 | 9.2% | 15.3% | G | 4.3–9.0 | |
| qOC12.2 | 12 | 9.7 | 10.1 | E5, E2 | 1.1E-04 | 3.1E-06 | 5.9% | 8.3% | A | 2.5–6.4 | Zhang et al. (2021) |
| qOC13.1 | 13 | 19.9 | 25.0 | E3, E5, E4, E2 | 7.8E-09 | 9.4E-07 | 9.1% | 12.5% | A | 5.5–9.8 | |
| qOC14.1 | 14 | 43.5 | 49.1 | E4, E3, E2 | 7.2E-11 | 9.0E-07 | 9.0% | 15.7% | A | 5.4–9.6 | |
| qOC15.1 | 15 | 42.7 | 49.6 | E3, E2, E4, E5 | 1.9E-10 | 9.7E-07 | 9.0% | 15.2% | G | 5.3–9.0 | |
| qOC16.1 | 16 | 5.0 | 7.6 | E3, E2, E4, E5 | 1.3E-10 | 9.0E-07 | 9.1% | 15.2% | G | 5.0–9.1 | |
| qOC16.2 | 16 | 31.6 | 37.7 | E2, E3 | 1.1E-10 | 5.0E-07 | 9.4% | 15.3% | G | 4.9–9.2 | |
| qOC17.1 | 17 | 43.3 | 49.3 | E2, E3, E4 | 9.1E-07 | 2.5E-10 | 9.0% | 16.3% | A | 4.9–9.9 | |
| qOC18.1 | 18 | 10.8 | 11.1 | E2, E3, E4 | 7.8E-07 | 3.1E-08 | 9.3% | 11.7% | G | 6.3–9.8 | |
| qOC19.1 | 19 | 0.7 | 3.6 | E4, E2, E5 | 7.0E-07 | 3.9E-07 | 9.2% | 11.2% | G | –8.5–4.3 | |
| qOC19.2 | 19 | 43.9 | 46.8 | E2, E4 | 7.6E-07 | 2.8E-08 | 9.1% | 12.9% | G | 7.6–9.8 | Chapman et al. (2003); Li et al. (2019) |
| qOC20.1 | 20 | 0.5 | 3.2 | E2, E3, E5, E4 | 7.9E-07 | 9.6E-08 | 9.1% | 11.1% | A | 8.2–9.5 | |
| qOC20.2 | 20 | 31.5 | 31.9 | E2, E4 | 1.0E-04 | 5.6E-06 | 5.9% | 7.8% | G | 3.5–6.4 | Bachlava et al. (2009); Zhang et al. (2021) |
| qOC20.3 | 20 | 43.9 | 49.0 | E2, E4, E3 | 1.2E-08 | 8.7E-07 | 9.1% | 12.1% | G | 6.5–8.9 | |
OC: oil content; E1, E2, E3 E4, E5, and E6 indicate 2017 Harbin, 2018 Harbin, 2019 Harbin, 2021 Harbin, 2018 Mudanjiang, and 2018 Qingan, respectively.