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. Author manuscript; available in PMC: 2023 Jun 20.
Published in final edited form as: J Vis Exp. 2023 Jan 13;(191):10.3791/64298. doi: 10.3791/64298

Table of Materials.

Name Company Catalog Number Comments
Bead beating and spot plating
Fly vials Genesee 32–121 autoclavable
Fly vial stoppers Genesee 59–201 autoclavable
Hand Applicator 3M 3M PA1
Heat Sealer Eppendorf 5390
Mini-Beadbeater 96 BioSpec 1001
Mini-BeadBeater Glass Mili Beads, 0.5 mm BioSpec 11079105
MPS 1000 Mini PCR Plate Spinner Labnet LI-CF-P1000
Rainin BenchSmart 96 semiautomated pipettor Mettler Toledo 30296705 Less expensive options available, including slotted 96 well pin tool from VP Scientific
TempPlate semi-skirted 96-well PCR plate, straight skirt, natural USA scientific 1402–9220 Must be polypropylene for heat sealer
Thermal Bond Heat Seal Foil 4titude 4ti-0591 Keep sterile
Tray Plate,128 × 85 mm, Polystyrene, Sterile SPL Life Sciences 31001 For making rectangular agar plates
Photobox construction
¼”-20 × ½” Bolts (X2) Amazon ASIN: B07BP1WR3H To attach the camera bracket. Brand not important. Any 1/4"-20 1/2" bolt works.
¼”-20 × ½” Connector Nut Amazon UPC: 799862376780 AKA cap nut or connector bolt. This is for attaching the rubber bands on the plate holder. Brand not important.
¼”−20 × ¾” bolts (X3) Amazon ASIN: B003QZSZY4 For the plate holder. Brand not important.
⅛” × ½” washer Amazon UPC: 611982484599 Washer for the cap nuts on outside of box. Brand not important. Spray paint black before attaching to blend with the acrylic.
18 Gauge Wire - Two Conductor Power Wire - 18 AWG Power Wire – 10ft Superbrightleds.com WP18–2
22–10 AWG Red Wire Nut - WNR2210 – Quantity 4 Superbrightleds.com WN-R2210
22–18 AWG 3/16 in Female Push On Connector - 22–18 AWG – Quantity 3 Superbrightleds.com SCFP-2218
4” Solderless Clamp-On Jumper Connector - 8mm Single Color LED Strip Lights – Quantity 3 Superbrightleds.com SBL-MA2P-8-2
4” Solderless Clamp-On Pigtail Adaptor - 8mm Single Color LED Strip Lights – Quantity 3 Superbrightleds.com SBL-MA2P-8-1
6” drawer handle Amazon ASIN: B07Z331P99 Any drawer handle should work.
6” Drawer slides Btibpse UPC: 712243424979 Trim the soft close rubber stoppers on the drawer sliders.
8–32 × ½” Cap Nuts (x4) Amazon ASIN: B00HYLZB98 Attaches drawer slide bolts on outside of box. Brand not important. Nylon won’t damage the acrylic. Spray paint black before attaching to blend with the acrylic.
8–32 × ½” Nylon Bolts (x4) Amazon ASIN: B07KX9T7NF To attach drawer slides. Brand not important. Any bolt or machine screw meeting the specifications works. Nylon won’t damage the acrylic and allows you to cut the bolt flush with the nut. Spray paint black before attaching to blend with the acrylic.
Acrylic Glue SCIGRIP Ean: 7844908489337 SCIGRIP Weld-On #4 Adhesive, Pint and Weld-On Applicator Bottle with Needle
Black Cable Ties - 10 Pack - 4 Inch Long Superbrightleds.com CT-B04-10
Camera L-Bracket WLPREOE, Vikerer, Unbranded ASIN: B09X46YKQZ The bracket should be “reversed” from its intended configuration so that the camera is on the “outside” of the L. Some brackets come in two pieces and allow for this alternate configuration, some don’t, you’ll need one that can be flipped. Also should have ¼’ holes for attachment. WLPREOE, Vikerer, Unbranded. Amazon Serial Identification Number given as an example.
Canon T series camera for tethering option OR Canon, Panasonic, Sony, Nikon, etc.. 1894C002 The Canon Ti series cameras are a good option and can tether to a computer. Use with the 18–55mm standard kit lens. Used options are recommended from the Canon T5 to T7 (current model).
Custom Length Single Color LED Strip Light - Eco Series Tape Light - 24V - IP20 - 250 lm/ft - Blue - 2 meters Superbrightleds.com STN-BBLU-B6A-08C1M-24V
Custom Length Single Color LED Strip Light - Eco Series Tape Light - 24V - IP20 - 250 lm/ft - Green – 2 meters Superbrightleds.com STN-BGRE-B6A-08C1M-24V
Custom Length Single Color LED Strip Light - Eco Series Tape Light - 24V - IP20 - 250 lm/ft - Natural White 4000K – 2 meters Superbrightleds.com STN-A40K80-B6A-08C1M-24V
Drill with ¼”, ⅛” drill bits Black & Decker BDCDD12PK Brand not important.
Flat Black Spray Paint, 2X Ultra-Matte Rustoleum 331182 Paint the interior of everything FLAT black. Brand not important.
Laser Cut Acrylic Walls Big Blue Saw www.bigbluesaw.com Use the attached PDF, delete all cutouts in the top piece except desired hole for camera
Mean Well LED Switching Power Supply - LPV Series 20–100W Single Output LED Power Supply - 24V DC - 20 Watt Superbrightleds.com LPV-20-24
Panasonic ZS100 for wifi connection to a phone, tablet, or computer Canon, Panasonic, Sony, Nikon, etc. DMC-ZS100K Panasonic cameras can be wirelessly connected to a computer for data transfer and remote shutter options. Used options are good.
Quick Release Plate Neewer Aluminium 50mm Quick Release Plate QR Clamp 3/8-inch with 1/4-inch ASIN: B07417F21D Add this to the bracket so the camera can be easily removed for changing color filters. Amazon Serial Identification Number given as an example.
Rubber Bands, Assorted sizes BAZIC Products Alliance Rubber 26649 Rubber bands go on the plate holder. Brand not important.
Screw/Adhesive Cable Tie Mounting Bases - 3/4 inch base – Quantity 4 Superbrightleds.com CTMB-20
SPST Round Rocker Switch - No LED – Quantity 3 Superbrightleds.com RRS-SP
Tiffen 29 Filter (Red) 72 mm Tiffen 72R29
Tiffen 58 Filter (Green) 72 mm Tiffen 7258
Software
ImageJ64 https://imagej.net/downloads N/A Free. Just cite: Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., … Cardona, A. (2012). Fiji: an opensource platform for biological-image analysis. Nature Methods, 9(7), 676–682. doi:10.1038/nmeth.2019
MacOSX Apple N/A Has a useful batch rename feature in Finder to rename a group of photos to facilitate organizing and analyzing in Count-on-it.
Unix BSD N/A 64 bit
Windows Microsoft N/A 64 bit