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. 2023 Jun 8;39(6):btad369. doi: 10.1093/bioinformatics/btad369

Table 1.

Mapping between categories in S800 and NCBI Taxonomya.

Journal category NCBI Taxonomy name (NCBI: txid) Rank Document count
Virology Viruses (NCBI: txid10239) Superkingdom 5843
Bacteriology Bacteria (NCBI: txid2) Superkingdom 6820
Mycology Fungi (NCBI: txid4751) Kingdom 1331
Botany Viridiplantae (NCBI: txid33090) Kingdom 3158
Zoology Metazoa (NCBI: txid33208) excluding Insecta (NCBI: txid50557) Kingdom 14 506
Entomology Insecta (NCBI: txid50557) Class 799
Protistology Eukaryota (NCBI: txid2759) excluding Metazoa (NCBI: txid33208), Fungi (NCBI: txid4751),b and Green Plants (NCBI: txid33090)c 671
a

The number of documents found in SwissProt for proteins belonging to organisms in each of these taxonomic groups is provided.

b

All organisms of the clade Opisthokonta, apart from Metazoa and Fungi, are treated as protists.

c

Chlorophyta and Streptophyta are phyla of Viridiplantae, so they belong to Botany and not to protists.