Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Jun 20;13:10043. doi: 10.1038/s41598-023-37176-z

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

(A and B) Phylogenetic position of Escherichia phage SKA49. (A) Nucleotide based GDBP tree provides an estimate of phage relationship with close homologs in BLAST n using VICTOR. Analysis identified one Family, one genus, and 12 species clusters respectively, identifying SKA49 as new species. (B) A proteome tree made by ViPTree software that uses genome wide similarities calculated by tBLASTx. Genomes for comparison were selected according to SG scores of 30 sequences in VIP tree ranging from 1 to 0.02 (supplementary Table S10B) (C and D) Phylogenetic position of Escherichia phage SKA64. (C) Nucleotide based GDBP tree provides an estimate of phage relationship with close homologs in BLAST n using VICTOR. Analysis identified one Family, one genus, and 14 species clusters respectively, identifying SKA64 as new species. (D) A proteome tree made by VIP Tree software that uses genome wide similarities calculated by tBLASTx using Similarity score generated by software . Both trees place SKA64 in the same genus. Genomes for comparison were selected according to SG scores of 39 sequences in VIP tree ranging from 1 to 0.07 (supplementary Table S10B).

(A and B) Phylogenetic position of Escherichia phage SKA49. (A) Nucleotide based GDBP tree provides an estimate of phage relationship with close homologs in BLAST n using VICTOR. Analysis identified one Family, one genus, and 12 species clusters respectively, identifying SKA49 as new species. (B) A proteome tree made by ViPTree software that uses genome wide similarities calculated by tBLASTx. Genomes for comparison were selected according to SG scores of 30 sequences in VIP tree ranging from 1 to 0.02 (supplementary Table S10B) (C and D) Phylogenetic position of Escherichia phage SKA64. (C) Nucleotide based GDBP tree provides an estimate of phage relationship with close homologs in BLAST n using VICTOR. Analysis identified one Family, one genus, and 14 species clusters respectively, identifying SKA64 as new species. (D) A proteome tree made by VIP Tree software that uses genome wide similarities calculated by tBLASTx using Similarity score generated by software . Both trees place SKA64 in the same genus. Genomes for comparison were selected according to SG scores of 39 sequences in VIP tree ranging from 1 to 0.07 (supplementary Table S10B).