Fig. 3. Imputation and phasing accuracy for the Koszyce trio.

a Mendel error rate across the 22 autosomes is counted when the parental and offspring genotypes violate Mendel transmission rules, excluding sites at which all three non-imputed genomes are REF/REF. b Switch error rates averaged over the three genomes. A switch error is counted between two consecutive heterozygous genotypes when the reported haplotypes are not consistent with those derived from the trio.