Table 1.

Code Availability and Version Number of Each Phylogenetic Program. Version Identifiers Correspond to Git Tags.

Program	Availability	Version
bito	https://github.com/phylovi/bito	autodiff-benchmark
phylojax	https://github.com/4ment/phylojax	v1.0.1
phylostan	https://github.com/4ment/phylostan	v1.0.5
physher	https://github.com/4ment/physher	v2.0.0
torchtree	https://github.com/4ment/torchtree	gradient-benchmark
torchtree-bito	https://github.com/4ment/torchtree-bito	gradient-benchmark
treeflow	https://github.com/christiaanjs/treeflow	autodiff-benchmark