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. 2023 Feb 22;104:87–148. doi: 10.3114/sim.2022.104.02

Table 1.

Primers used in this study, with originating loci, sequences program and references.

Gene/DNA regions Primers PCR amplification procedures References

Name Abbreviation Name Direction Sequence (5’→3’)
Beta tubulin tub T1 Forward AACATGCGTGAGATTGTAAGT 95 °C 3 min; 35 cycles of 94 °C 30 s, 54 °C 45 s, 72 °C 15 s; 72 °C 10 min; 10 °C soak O’Donnell & Cigelnik (1997)
T2 Reverse TAGTGACCCTTGGCCCAGTTG
Calmodulin CaM CL1 Forward GARTWCAAGGAGGCCTTCTC 95 °C 1 min; 35 cycles of 94 °C 30 s, 55 °C 30 s, 72 °C 15 s; 72 °C 10 min; 10 °C soak O’Donnell et al. (2000b)
CL2A Reverse TTTTTGCATCATGAGTTGGAC
Histone H3 H3-la Forward ACTAAGCAGACCGCCCGCAGG 96 °C 2 min; 30 cycles of 92 °C 1 min, 60 °C 1 min, 72 °C 10 s; 72 °C 5 min; 10 °C soak Roux et al. (2001)
H3-lb Reverse GCGGGCGAGCTGGATGTCCTT
Internal transcribed spacer region of the rDNA ITS ITS1 Forward CCGTAGGTGAACCTGCGG 95 °C 5 min; 35 cycles of 95 °C 30 s, 52 °C 30 s, 72 °C 10 s; 72 °C 5 min; 10 °C soak White et al. (1990)
ITS4 Reverse TCCTCCGCTTATTGATATGC
RNA polymerase largest subunit rpb1 F7 Forward CRACACAGAAGAGTTTGAAGG 95 °C 5 min; 5 cycles of 95 °C 2 min, 58 °C 45 s, 72 °C 20 s; 5 cycles of 95 °C 2 min, 57 °C 45 s, 72 °C 20 s; 35 cycles of 95 °C 2 min, 56 °C 45 s, 72 °C 20 s; 72 °C 10 min; 10 °C soak O’Donnell et al. (2010)
G2R Reverse GTCATYTGDGTDGCDGGYTCDCC
RNA polymerase second largest subunit rpb2 5f2 Forward GGGGWGAYCAGAAGAAGGC 94 °C 90 s; 35 cycles of 94 °C 45 s, 57 °C 45 s, 72 °C 20 s; 72 °C 5 min; 10 °C soak Reeb et al. (2004)
7cf Forward ATGGGYAARCAAGCYATGGG Liu et al. (1999)
7cr Reverse CCCATRGCTTGYTTRCCCAT
11ar Reverse GCRTGGATCTTRTCRTCSACC
translation elongation factor 1-alpha tef1 EF-1 Forward ATGGGTAAGGARGACAAGAC 94 °C 90 s; 35 cycles of 94 °C 45 s, 55 °C 45 s, 72 °C 15 s; 72 °C 10 min; 10 °C soak O’Donnell et al. (1998b)
EF-2 Reverse GGARGTACCAGTSATCATG