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. 2023 Apr 19;14(6):1114–1130. doi: 10.1039/d3md00010a

Induced-fit docking score and binding free energy (MM-GBSA) between the selected most active inhibitor 4b and co-crystal GSK299423 on enzyme 2XCS.

Contributions IFD (kcal mol−1) Contributions MM-GBSA (kcal mol−1)
4h GSK299423 4h GSK299423
G score a −10.943 −7.282 ΔGBindi −26.486 −31.474
G Lipo b −3.636 −3.915 ΔGCoulj −28.447 −7.131
G Hbond g −0.864 −0.160 ΔGCovk 6.971 3.087
G evdW c −63.857 −51.923 ΔGH-bondl −0.824 −0.337
G eCoul d −18.569 −3.558 ΔGLipom −9.005 −13.585
G emodel e −135.299 −74.950 ΔGPackingn −0.290 −0.096
G energy f −82.426 −55.481 ΔGSolvo 65.332 45.518
IFDscoreh −1814.744 −1803.088 ΔGvdWp −60.222 −58.930
a

Glide score.

b

Glide lipophilic contact plus phobic attractive term in the glide score.

c

Glide van der Waals energy.

d

Glide Coulomb energy.

e

Glide model energy.

f

Glide energy.

g

Glide hydrogen-bonding.

h

Induced fit docking score.

i

Free energy of binding.

j

Coulomb energy.

k

Covalent energy (internal energy).

l

Hydrogen bonding.

m

Lipophilic energy (nonpolar contribution estimated by solvent accessible surface area).

n

Generalized Born electrostatic solvation energy.

o

van der Waals energy.

p

π–π packing energy.