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. 2023 Jun 8;29(6):1563–1577. doi: 10.1038/s41591-023-02327-2

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 3 — Expression is shown within each cell type compartment. a, Epithelial cell type markers, b, Immune cell type markers, c, Stromal cell type markers, d, Endothelial cell type markers. Expression was normalized such that the maximum group expression of cells within the compartment for each marker was set to 1. Marker gene sets include both sets that mark groups of cell types (for example ‘epithelial’) and single cell types (for example ‘basal resting’). For each marker gene set, cell types identified by the set are boxed. AT: alveolar type. TB: terminal bronchiole. SMG: submucosal gland. DC: dendritic cell. Mph: macrophage. NK: natural killer. MT: metallothionein. SM: smooth muscle. EC: endothelial cell.