Table 3.
Top 5 significantly enriched gene sets in normal control group and GC group.
| Gene set name | NES | pvalue | p.adjust | qvalues |
|---|---|---|---|---|
| Enriched in normal control group | ||||
| GSE19888 CTRL VS T Cell membranes ACT mast Cell down | -1.692957907 | 0.000161482 | 0.001895759 | 0.001302505 |
| GSE21670 Untreated vs TGFB treated CD4 T Cell up | -1.554264308 | 0.001274963 | 0.009257259 | 0.006360315 |
| GSE2585 CD80 high vs low MTEC up | -1.657193329 | 0.000254598 | 0.002690672 | 0.00184866 |
| GSE2706 Unstim VS 2H LPS DC up | -1.634072618 | 0.000987185 | 0.007658545 | 0.005261899 |
| GSE37301 Rag2 KO VS Rag2 and Ets1 KO NK cell down | -1.593873519 | 0.000661997 | 0.005698322 | 0.003915103 |
| Enriched in treat (GC) group | ||||
| GSE10325_CD4 T Cell VS Myeloid down | 2.298424482 | 1.00E-10 | 1.08E-08 | 7.44E-09 |
| GSE10325 Lupus B Cell VS Lupus Myeloid down | 2.403164632 | 1.00E-10 | 1.08E-08 | 7.44E-09 |
| GSE10325 Lupus CD4 T Cell VS Lupus Myeloid down | 2.593696725 | 1.00E-10 | 1.08E-08 | 7.44E-09 |
| GSE11057 CD4 Eff Mem VS Pbmc down | 2.176921036 | 1.00E-10 | 1.08E-08 | 7.44E-09 |
| GSE11057 Pbmc VS Mem CD4 T Cell up | 2.206216446 | 1.00E-10 | 1.08E-08 | 7.44E-09 |