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. 2023 Jun 23;6:664. doi: 10.1038/s42003-023-05043-2

Fig. 1. NUP98 and RAE1 are enriched in the progenitor state and constitute a distinct complex.

Fig. 1

a Relative mRNA expression of nuclear-basket NUPs, comparing the progenitor-state versus the differentiated (day 4) primary human keratinocytes, based on RNA-seq data (multiple unpaired t test, N = 3 biological replicates). b Western blots showing the distribution of nuclear-basket NUPs in the fractions from size-exclusion chromatography (SEC), using the soluble extraction from the nuclei of progenitor-state keratinocytes. The fractions corresponding to the protein standards for SEC are labeled on the top. c, d Western blots showing the co-immunoprecipitation between NUP98 and RAE1 in the soluble extraction from the nuclei (progenitor-state keratinocytes). NUP98 and RAE1 co-immunoprecipitated each other, but not other nuclear-pore subunits such as TPR. e RT-qPCR comparing the relative NUP98 expression at the mRNA level in the progenitor-state, early- (day2) and mid- (day4) differentiation state of keratinocytes (one-way ANOVA with post-hoc test, N = 3 biological replicates, data are represented as mean ± standard deviation). f, g Western blots and quantifications comparing NUP98 protein expression in keratinocyte differentiation, with Lamin A/C used as the loading control (One-way ANOVA with post-hoc test, N = 4, data are represented as mean ± standard deviation). h RT-qPCR comparing the relative RAE1 mRNA expression in keratinocyte differentiation (one-way ANOVA with post-hoc test, data are represented as mean  ±  standard deviation). i, j Western blots and quantifications comparing RAE1 protein expression levels in keratinocyte differentiation, with Lamin A/C used as the loading control (one-way ANOVA with post-hoc test, N = 3, quantification data are represented as mean  ±  standard deviation).