Table 1.
Data types and sources.
| Data type | Resource | Link | Retrieval date | Version/Release |
|---|---|---|---|---|
| Pathways | KEGG34 | https://www.genome.jp/kegg/pathway.html | 10/14/2021 | Release 100 |
| WikiPathways33 | https://www.wikipathways.org/ | 10/14/2021 | Version 20211010 | |
| Reactome35 | https://reactome.org/ | 10/9/2021 | Version 78 | |
| Phenotypes | Human Phenotype Ontology37 | https://hpo.jax.org/app/ | 10/14/2021 | Release 2021-10-10 |
| KEGG disease34 | https://www.genome.jp/kegg/disease/ | 10/14/2021 | Release 100 | |
| Gene ontologies | Gene Ontology36,40 | http://geneontology.org/ | 10/7/2021 | Release 2021-09-01 |
| Genes, gene products | Ensembl41 | https://www.ensembl.org/index.html | 10/31/2019 | Release 98 |
| AOPs | Aop-Wiki | https://aopwiki.org/aops.json | 10/26/2022 | Release 2.5 |
| KEs, KE level, biological system | Aop-Wiki | https://aopwiki.org/events.json | 10/26/2022 | Release 2.5 |
| KERs | Aop-Wiki | https://aopwiki.org/downloads/aop_ke_ker.tsv | 10/26/2022 | Release 2.5 |