Table 4.
TF gene symbol |
TF Family | DNA Binding Motif | Reported Human phenotype (Hematological) | MGI Mouse Phenotype (Hematological) | Role in hematopoiesis (downstream differentiation) | Known Interacting TF partners (STRING) | Target genes (TFs) | |
---|---|---|---|---|---|---|---|---|
OMIM | MONDO | Phenotypes | ENCODE and ChEA Consensus TFs from ChIP-X | |||||
GATA3 | GATA | WGATAR | N/A | N/A | Abnormal T cell physiology and differentiation Abnormal definitive hematopoiesis Abnormal erythrocyte morphology |
T Cells, HSC, NK cells, B cells, CLP | TAL1, IL5 IL33, IL33, STAT6, TBX21, FOXP3, IL13, SMAD3, ESR1, FOXA1 |
GATA1, SALL4, KLF4, MYC, E2F1, REST, TRIM28, SPI1, STAT3 |
SPI1
(PU.1) |
ETS | GGAA | Decreased/absent circulating B cells Impaired B-cell development Lymphopenia Neutropenia |
N/A | Transient neutropenia Abnormal granulocyte, neutrophil, macrophage, blood cell and B/T cell differentiation Increased hematopoietic stem cell proliferation/abnormal definitive hematopoiesis Abnormal common myeloid progenitor cell morphology Abnormal erythropoiesis, leukopoiesis |
Monocyte, B cells, GMP, CLP, CMP, Granulocyte | IRF4, GATA1, CSF3R, EP300, JUN, TBP, GATA2, IRF8, CEBPE, CEBPA | SPI1, ELF1, FLI1, GABPA, TAF1, MAX, CREB1, UBTF, ATF2 |
ERG | ETS | GGA(A/T) | N/A | AML | Abnormal embryonic erythropoiesis Thrombocytopenia Decreased leukocyte HSC cell number Pancytopenia |
No differentiation - specific role | TMPRSS2, AR, SPI1, RUNX2, CBFB | SPI1, TAF1, YY1, MAX, NFYB, UBTF, BRCA1, E2F1, MYC |
Candidate inclusions to BMF/HM predisposition gene lists, ranked strong due to known role in hematopoiesis, previous disease association, pathogenicity predictor scores, and gene ontology. TF demonstrates similarities to known BMF/HM predisposition genes in reported human/mouse phenotypes, roles in downstream hematopoietic differentiation (15, 18–21) and known interacting TF partners and target genes. Known interacting partners collated through STRING (12) and target genes through ChEA from Chip-X (13).
NA, not applicable.