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. 2023 Jun 12;13:1183318. doi: 10.3389/fonc.2023.1183318

Table 4.

Strong candidate inclusions to BMF/HM predisposition gene lists.

TF
gene
symbol
TF Family DNA Binding Motif Reported Human phenotype (Hematological) MGI Mouse Phenotype (Hematological) Role in hematopoiesis (downstream differentiation) Known Interacting TF partners (STRING) Target genes (TFs)
OMIM MONDO Phenotypes ENCODE and ChEA Consensus TFs from ChIP-X
GATA3 GATA WGATAR N/A N/A Abnormal T cell physiology and differentiation
Abnormal definitive hematopoiesis
Abnormal erythrocyte morphology
T Cells, HSC, NK cells, B cells, CLP TAL1, IL5
IL33, IL33, STAT6, TBX21, FOXP3, IL13, SMAD3, ESR1, FOXA1
GATA1, SALL4, KLF4, MYC, E2F1, REST, TRIM28, SPI1, STAT3
SPI1
(PU.1)
ETS GGAA Decreased/absent circulating B cells
Impaired B-cell development
Lymphopenia
Neutropenia
N/A Transient neutropenia
Abnormal granulocyte, neutrophil, macrophage, blood cell and B/T cell differentiation
Increased hematopoietic stem cell proliferation/abnormal definitive hematopoiesis
Abnormal common myeloid progenitor cell morphology
Abnormal erythropoiesis, leukopoiesis
Monocyte, B cells, GMP, CLP, CMP, Granulocyte IRF4, GATA1, CSF3R, EP300, JUN, TBP, GATA2, IRF8, CEBPE, CEBPA SPI1, ELF1, FLI1, GABPA, TAF1, MAX, CREB1, UBTF, ATF2
ERG ETS GGA(A/T) N/A AML Abnormal embryonic erythropoiesis
Thrombocytopenia
Decreased leukocyte HSC cell number
Pancytopenia
No differentiation - specific role TMPRSS2, AR, SPI1, RUNX2, CBFB SPI1, TAF1, YY1, MAX, NFYB, UBTF, BRCA1, E2F1, MYC

Candidate inclusions to BMF/HM predisposition gene lists, ranked strong due to known role in hematopoiesis, previous disease association, pathogenicity predictor scores, and gene ontology. TF demonstrates similarities to known BMF/HM predisposition genes in reported human/mouse phenotypes, roles in downstream hematopoietic differentiation (15, 1821) and known interacting TF partners and target genes. Known interacting partners collated through STRING (12) and target genes through ChEA from Chip-X (13).

NA, not applicable.