REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit monoclonal anti-sp7/Osterix antibody | Abcam | Cat # ab227820 |
Deposited data | ||
Raw RNA-seq data | This paper | GEO GSE224007 |
Experimental models: Organisms/strains | ||
Acomys cahirinus | In-house colony | |
Software and algorithms | ||
Trimmomatic v0.39 | Bolger, et al.46 | https://github.com/timflutre/trimmomatic/tree/master/adapters |
HiSat2 (v2.2.1) | Kim., et al.19 | https://doi.org/10.1038/s41587-019-0201-4 |
SamTools (1.12) | Danecek, et al.47 | https://doi.org/10.1093/gigascience/giab008 |
Stringtie | Kim, D, et al.19 | https://doi.org/10.1038/s41587-019-0201-4 |
Rsubreads package (v2.0.0) | Liao, et al.48 | https://doi.org/10.1093/nar/gkz114 |
Other | ||
Acomys skin transcriptome | Brant, et al.18 | Geo Accession GSE113081 |
Featurecounts | Liao, et al.49 | https://doi.org/10.1093/bioinformatics/btt656 |
EdgeR | Robinson, et al.50 | https://doi.org/10.1093/bioinformatics/btp616 |
Acomys tail transcriptome | This paper | Geo Accession GSE224007 |