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. Author manuscript; available in PMC: 2023 Jun 26.
Published in final edited form as: J Biomed Inform. 2023 Feb 6;139:104302. doi: 10.1016/j.jbi.2023.104302

Table 5.

Event and attribute classification performance with gold standard medication mentions.

Model Metric MedSingleTask
MedMultiTask
MedSpan
MedIdentifiers
MedIDTyped
Macro Micro Macro Micro Macro Micro Macro Micro Macro Micro
event P 0.771 0.884 0.774 0.894 0.830 0.917 0.848 0.931 0.798 0.913
R 0.697 0.884 0.739 0.894 0.818 0.917 0.844 0.931 0.851 0.913
F1 0.729 0.884 0.755 0.894 0.824 0.917 0.846 0.931 0.815 0.913

action P 0.704 0.728 0.789 0.741 0.856 0.808 0.825 0.797 0.884 0.821
R 0.482 0.479 0.570 0.616 0.671 0.726 0.685 0.739 0.706 0.762
F1 0.568 0.578 0.646 0.673δ 0.739 0.765 0.742 0.767 0.775 0.791

actor P 0.614 0.761 0.675 0.833 0.711 0.857 0.755 0.865 0.721 0.876
R 0.513 0.707 0.528 0.684 0.552 0.782 0.623 0.811 0.564 0.805
F1 0.554 0.733 0.592 0.751 0.611 0.818 0.677 0.837 0.622 0.839

temporality P 0.707 0.729 0.768 0.802 0.727 0.785 0.724 0.804 0.743 0.812
R 0.570 0.622 0.592 0.645 0.631 0.691 0.655 0.749 0.651 0.746
F1 0.629 0.671 0.665 0.715δ 0.675 0.735δ 0.687 0.776 0.691 0.778

certainty P 0.580 0.730 0.670 0.806 0.748 0.846 0.760 0.856 0.737 0.851
R 0.656 0.713 0.555 0.635 0.684 0.749 0.782 0.795 0.718 0.779
F1 0.611 0.722 0.598 0.710 0.701 0.795 0.766 0.824 0.711 0.813

Overall* P 0.675 0.766 0.735 0.814 0.774 0.843 0.782 0.851 0.777 0.855
R 0.584 0.681 0.597 0.694 0.671 0.773 0.718 0.805 0.698 0.801
F1 0.618 0.718 0.651 0.748δ 0.710 0.806 0.744 0.827 0.723 0.827
*

Overall score is an unweighted average of the event and attribute scores.

indicates performance significance p<0.05 compared across all models.

indicates performance significance p<0.05 compared against MedSingleTask and MedMultiTask.

δ

indicates performance significance over MedSingleTask.