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. Author manuscript; available in PMC: 2023 Jun 26.
Published in final edited form as: J Biomed Inform. 2023 Feb 6;139:104302. doi: 10.1016/j.jbi.2023.104302

Table 9.

Event and attribute classification performance with predicted medication mentions on medications that co-occur with different event and/or attribute labels. We used the Clinical BERT model to extract the medications.

Model Metric MedSingleTask
MedMultiTask
MedSpan
MedIdentifiers
MedIDTyped
Macro Micro Macro Micro Macro Micro Macro Micro Macro Micro
event P 0.631 0.679 0.612 0.661 0.814 0.836 0.806 0.843 0.771 0.800
R 0.612 0.679 0.607 0.661 0.794 0.836 0.804 0.843 0.785 0.800
F1 0.613 0.679 0.608 0.661 0.802 0.836 0.803 0.843 0.770 0.800

action P 0.510 0.607 0.432 0.547 0.625 0.779 0.770 0.760 0.903 0.823
R 0.255 0.306 0.317 0.369 0.548 0.667 0.540 0.685 0.594 0.712
F1 0.329 0.407 0.361 0.441 0.578 0.718 0.607 0.720 0.674 0.763

actor P 0.919 0.840 0.496 0.756 0.603 0.857 0.620 0.890 0.462 0.905
R 0.370 0.568 0.365 0.559 0.499 0.811 0.495 0.802 0.413 0.775
F1 0.473 0.677 0.420 0.642 0.532 0.833 0.538 0.844 0.437 0.835

temporality P 0.743 0.696 0.793 0.770 0.801 0.813 0.789 0.840 0.854 0.853
R 0.483 0.495 0.496 0.514 0.652 0.703 0.693 0.757 0.660 0.730
F1 0.581 0.579 0.606 0.616 0.715 0.754 0.737 0.796 0.732 0.786

certainty P 0.607 0.667 0.661 0.732 0.772 0.844 0.806 0.869 0.812 0.884
R 0.548 0.595 0.479 0.468 0.694 0.730 0.801 0.775 0.764 0.757
F1 0.569 0.629 0.543 0.571 0.695 0.783 0.795 0.819 0.765 0.816

Overall P 0.682 0.698 0.599 0.693 0.723 0.826 0.758 0.840 0.761 0.853
R 0.453 0.529 0.453 0.514 0.637 0.749 0.666 0.772 0.643 0.755
F1 0.513 0.594 0.508 0.586 0.664 0.785 0.696 0.804 0.675 0.800