Table 9.
Event and attribute classification performance with predicted medication mentions on medications that co-occur with different event and/or attribute labels. We used the Clinical BERT model to extract the medications.
Model | Metric | MedSingleTask |
MedMultiTask |
MedSpan |
MedIdentifiers |
MedIDTyped |
|||||
---|---|---|---|---|---|---|---|---|---|---|---|
Macro | Micro | Macro | Micro | Macro | Micro | Macro | Micro | Macro | Micro | ||
event | P | 0.631 | 0.679 | 0.612 | 0.661 | 0.814 | 0.836 | 0.806 | 0.843 | 0.771 | 0.800 |
R | 0.612 | 0.679 | 0.607 | 0.661 | 0.794 | 0.836 | 0.804 | 0.843 | 0.785 | 0.800 | |
F1 | 0.613 | 0.679 | 0.608 | 0.661 | 0.802 | 0.836 | 0.803 | 0.843 | 0.770 | 0.800 | |
| |||||||||||
action | P | 0.510 | 0.607 | 0.432 | 0.547 | 0.625 | 0.779 | 0.770 | 0.760 | 0.903 | 0.823 |
R | 0.255 | 0.306 | 0.317 | 0.369 | 0.548 | 0.667 | 0.540 | 0.685 | 0.594 | 0.712 | |
F1 | 0.329 | 0.407 | 0.361 | 0.441 | 0.578 | 0.718 | 0.607 | 0.720 | 0.674 | 0.763 | |
| |||||||||||
actor | P | 0.919 | 0.840 | 0.496 | 0.756 | 0.603 | 0.857 | 0.620 | 0.890 | 0.462 | 0.905 |
R | 0.370 | 0.568 | 0.365 | 0.559 | 0.499 | 0.811 | 0.495 | 0.802 | 0.413 | 0.775 | |
F1 | 0.473 | 0.677 | 0.420 | 0.642 | 0.532 | 0.833 | 0.538 | 0.844 | 0.437 | 0.835 | |
| |||||||||||
temporality | P | 0.743 | 0.696 | 0.793 | 0.770 | 0.801 | 0.813 | 0.789 | 0.840 | 0.854 | 0.853 |
R | 0.483 | 0.495 | 0.496 | 0.514 | 0.652 | 0.703 | 0.693 | 0.757 | 0.660 | 0.730 | |
F1 | 0.581 | 0.579 | 0.606 | 0.616 | 0.715 | 0.754 | 0.737 | 0.796 | 0.732 | 0.786 | |
| |||||||||||
certainty | P | 0.607 | 0.667 | 0.661 | 0.732 | 0.772 | 0.844 | 0.806 | 0.869 | 0.812 | 0.884 |
R | 0.548 | 0.595 | 0.479 | 0.468 | 0.694 | 0.730 | 0.801 | 0.775 | 0.764 | 0.757 | |
F1 | 0.569 | 0.629 | 0.543 | 0.571 | 0.695 | 0.783 | 0.795 | 0.819 | 0.765 | 0.816 | |
| |||||||||||
Overall | P | 0.682 | 0.698 | 0.599 | 0.693 | 0.723 | 0.826 | 0.758 | 0.840 | 0.761 | 0.853 |
R | 0.453 | 0.529 | 0.453 | 0.514 | 0.637 | 0.749 | 0.666 | 0.772 | 0.643 | 0.755 | |
F1 | 0.513 | 0.594 | 0.508 | 0.586 | 0.664 | 0.785 | 0.696 | 0.804 | 0.675 | 0.800 |