Table 1.
Statistics of genome assembly and gene annotation of vestimentiferans
| Lamellibrachia satsuma (this study) | Lamellibrachia luymesi 27 | Riftia pachyptila 8 | Paraescarpia echinospica 7 | |
|---|---|---|---|---|
| Total size (bases) | 735,529,629 | 687,711,696 | 560,783,187 | 1,090,967,472 |
| Number of scaffolds | 306 | 11,871 | 447 | 7,389 (14 pseudo-chromosomes + 7375 contigs) |
| N50 scaffold size (bases) | 8,074,470 | 372,990 | 2,870,320 | 67,235,296 |
| GC content (%) | 40.2 | 40.2 | 40.9 | 40.6 |
| Number of protein-coding genes | 27,979 | 38,998 | 25,984 | 22,642 |
| BUSCO completeness for genome assembly (%) | 95.5 [S: 95.3, D: 0.2] F: 2.7, M: 1.8 |
91.8 [S: 91.1, D: 0.7] F: 5.3, M: 2.9 |
94.7 [S: 94.4, D: 0.3] F: 3.4, M: 1.9 |
94.1 [S: 92.2, D: 1.9] F: 3.7, M: 2.2 |
| BUSCO completeness for gene models (%) | 96.2 [S: 95.6, D: 0.6] F: 1.2, M: 2.6 |
94.0 [S: 93.3, D: 0.7] F: 4.5, M: 1.5 |
93.4 [S: 92.9, D: 0.5] F: 3.4, M: 3.2 |
81.4 [S: 79.4, D: 2.0] F: 7.0, M: 11.6 |
Only the longest transcript variant of each gene was used for analysis with BUSCO v.5.3.2.
S: complete and single-copy BUSCOs; D: complete and duplicated BUSCOs; F: fragmented BUSCOs; M: missing BUSCOs.