Table 2.

Correlation analysis of transcript length with compositional parameters, codon bias measures, gene expression, and protein properties.

Up-regulated transcript	%A	%C	%T	%G	%A (3)	%C (3)	%T (3)	%G(3)	%GC (all)
r	0.544	−0.159	−0.397	0.346	0.211	0.071	0.330	−0.717	0.007
p	0.029	0.557	0.128	0.190	0.433	0.793	0.212	0.002	0.978
Significance	*	NS	NS	NS	NS	NS	NS	**	NS
Down-regulated transcript	%A	%C	%T	%G	%A(3)	%C(3)	%T(3)	%G(3)	%GC(all)
r	0.904	−0.215	−0.520	0.294	0.757	−0.610	0.449	−0.363	−0.085
p	0.013	0.683	0.290	0.572	0.081	0.198	0.372	0.480	0.873
Significance	*	NS	NS	NS	NS	NS	NS	NS	NS
Up-regulated transcript	%GC(1)	%GC(2)	%GC(3)	CAI_59	Scaled_Chi	GRAVY	AROMA	PC 1	PC 2
r	0.780	−0.518	−0.284	0.417	0.968	−0.855	−0.579	0.680	0.156
p	0.000	0.040	0.286	0.108	0.000	0.000	0.019	0.004	0.563
Significance	***	*	NS	NS	***	***	*	**	NS
Down-regulated transcript	%GC(1)	%GC(2)	%GC(3)	CAI_59	Scaled_Chi	GRAVY	AROMA	PC 1	PC 2
r	0.414	0.685	−0.760	−0.760	0.995	−0.804	−0.550	0.760	−0.460
p	0.414	0.133	0.079	0.079	0.000	0.054	0.258	0.079	0.359
Significance	NS	NS	NS	NS	***	NS	NS	NS	NS

***p<0.001; **p<0.01; *p<0.05; NS, non-significant.