Table 3.

Top 15 high occurring codon pairs in APP, CCND1, CCNE1, and PTPA transcripts.

APP codon pairs	No of codons	Adjusted score	CCND1 codon pairs	No of codons	Adjusted score	CCNE1 codon pairs	No of codons	Adjusted score	PTPA codon pairs	No of codons	Adjusted score
ACC–ACC	77	0.98	GAG–GAG	11	3.72	AGG–GAG	13	0.85	CTG–GAG	18	0.96
GAA–GAA	66	0.84	GAG–GTC	3	1.01	GAT–GAA	12	0.78	GAC–TAC	17	0.91
GAG–GAG	55	0.70	CTG–GAG	3	1.01	ATT–GCA	10	0.65	TTC–ATC	16	0.85
GTG–GAA	44	0.56	CTG–CTG	3	1.01	TTG–GAT	8	0.52	GAT–GAG	16	0.85
GCC–AAC	44	0.56	TTC–CTG	2	0.68	TTC–TCG	8	0.52	TTC–AAG	12	0.64
GCA–GAA	44	0.56	TTC–CTC	2	0.68	TTA–ATG	8	0.52	GTG–GAT	12	0.64
GAT–GAG	44	0.56	TTC–ATT	2	0.68	TGT–GTC	8	0.52	GTC–CCT	12	0.64
GAA–GCC	44	0.56	TGC–GAG	2	0.68	TCT–GAA	8	0.52	GCT–GCT	12	0.64
GAA–GAG	39	0.50	TCC–TAC	2	0.68	GGG-AGC	8	0.52	GAT–GAC	12	0.64
GTG–GAG	33	0.42	TCC–ATG	2	0.68	GCC–ATG	8	0.52	GAG–AAG	12	0.64
GAT–GAC	33	0.42	GTG–GCC	2	0.68	GAG–GAA	8	0.52	CTG–CCC	12	0.64
GAG–GAA	33	0.42	GTG–GAC	2	0.68	GAC–AAA	8	0.52	CTC–TGC	12	0.64
GAG–AGA	33	0.42	GCG–GAG	2	0.68	GAA–GAT	8	0.52	CAG–CTG	12	0.64
GAG–ACA	33	0.42	GCC–GCA	2	0.68	GAA–ATG	8	0.52	AAG–TTC	12	0.64
GAC–AAG	33	0.42	GCC–GAG	2	0.68	CTT–CTG	8	0.52	AAG–GCC	12	0.64