Figure A1.

(A) Box plot showing the number of sequenced read pairs in ATAC and GEX, grouped by protocol, per sample (top) and mean raw reads per cell in each sample (bottom). The middle line represents the median, the lower and upper edges of the rectangle represent the first and third quartiles, and the lower and upper whiskers represent the interquartile range (IQR) × 1.5. Outliers beyond the end of the whiskers are plotted individually. Protocol A, n = 18; Protocol B, n = 7, Protocol C, n = 5; Protocol D, n = 5; Protocol E, n = 1. (B) FACS histogram analyses of non-stained and 7-AAD stained samples from ovarian cancer tissue. (C) Representative nuclei obtained from the preparation done on ovarian cancer tissue following protocol E. Scale bar represents 50 μm.