REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
Anti-NeuN	Millipore	MAB377X; RRID:AB_2149209
Anti-RBPMS	Novus Biological	NBP2-20112
Biological samples
Frozen adult post-mortem human retinas	UTAH LIONS Eye Bank	N/A
Chemicals, peptides, and recombinant proteins
Rnase inhibitor	Takara Bio	2323B
MACS BSA Stock Solution	Miltenyi Biotec	130-091-376
Protease inhibitor	Roche	11697498001
Tween 20	Bio-Rad	1662404
Trizma Hydrochloride Solution, pH 7.4	Sigma-Aldrich	T2194
Sodium Chloride Solution, 5M	Sigma-Aldrich	59222C
Magnesium Chloride Solution, 1M	Sigma-Aldrich	M1028
Nonidet P40 Substitute IGEPAL CA-630	Sigma-Aldrich	I8896
Critical commercial assays
Chromium Next GEM Single Cell 3′ Kit v3.1	10x Genomics
Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1	10x Genomics
Deposited data
snRNA-seq and snATAC-seq data	This paper	https://data.humancellatlas.org/explore/projects/9c20a245-f2c0-43ae-82c9-2232ec6b594f https://cellxgene.cziscience.com/collections/af893e86-8e9f-41f1-a474-ef05359b1fb7
Software and algorithms
Cell Ranger	10x Genomics	3.0.2
Cell Ranger ATAC	10x Genomics	1.2.0
SoupX	Young and Behjati.40	https://github.com/constantAmateur/SoupX
Seurat	Hao et al.41	https://satijalab.org/seurat/
DoubletFinder	McGinnis et al.42	https://github.com/chris-mcginnis-ucsf/DoubletFinder
scVI	Lopez et al.43	https://scvi-tools.org/
scPred	Alquicira-Hernandez et al.44	https://github.com/powellgenomicslab/scPred
LIGER	Welch et al.36	https://github.com/welch-lab/liger
Pysam		https://pysam.readthedocs.io/en/latest/api.html
Bedtools		https://bedtools.readthedocs.io/en/latest/
macs2	Zhang et al.45	https://pypi.org/project/MACS2/
Deeptools	Ramírez et al.46	https://deeptools.readthedocs.io/en/develop/
SCENIC	Aibar et al.35	https://github.com/aertslab/SCENIC