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. 2023 May 23;3(6):100332. doi: 10.1016/j.xgen.2023.100332

Figure 2.

Figure 2

Evaluation of the AWI-Gen dataset imputed by the five reference panels

(A) Total number of SNPs imputed by different panels and their distribution across all R2 or INFO score bins.

(B) Average INFO score (or R2) across allele frequency bins.

(C) Number of imputed SNPs across allele frequency bins.

(D) SNP density per Mb for chromosome 1, related to Figure S1.

All evaluations are based on 10,903 individuals. AGR, African Genome Resource hosted at the SIS; KGP_S, 1000 Genomes Project hosted at the SIS; HRC, Haplo-type Reference Consortium hosted at the SIS; KGP_M, 1000 Genomes Project hosted at the MIS; TOPMed, hosted at the TIS.