Table 1.
Locus | Definition | Primer | Annealing (PCR) | Reference |
---|---|---|---|---|
ITS | Internal transcribed spacer | ITS4 | a 55 °C, 50 s b | [20] |
ITS5 | ||||
LSU | Large subunit 28S | LR0R | a 55 °C, 50 s b | [21] |
LR5 | ||||
rpb2 | DNA-dependent RNA polymerase II largest subunit | 5F | a 57 °C, 55 s b | [22] |
7cR | ||||
SSU | The partial18S small subunit | NS1 | a 55 °C, 50 s b | [20] |
NS4 | ||||
tef1-α | Translation elongation factor 1 alpha | 983F | a 56 °C, 50 s b | [23] |
2218R | ||||
tub2 | Beta-tubulin 2 | Bt2a | a 52 °C, 50 s b | [24] |
Bt2b |
a Initial denaturation of 2 min at 94 °C, followed by 35 cycles of denaturation at 95 °C for 30 s, annealing temperature and time for different genes are mentioned in Table 1. b 90 s of extension at 72 °C and a final extension of 10 min at 72 °C.