Table 1.
List of taxa and their GenBank accession numbers included in the phylogenetic analyses.
| Taxa Names |
Culture Accession
No. |
GenBank Accession No. | ||||
| ITS | tef1-α | tub2 | cal | his3 | ||
| Cytospora disciformis | CBS 116827 T | KY051801 | KX965072 | KX964907 | N/A | N/A |
| C. leucostoma | SXYLt * | LKEB00000000 | N/A | N/A | N/A | N/A |
| Diaporthe acuta | CGMCC 3.19600 T | MK626957 | MK654802 | MK691225 | MK691124 | MK726161 |
| D. acuta | PSCG045 | MK626956 | MK654809 | MK691223 | MK691123 | MK726160 |
| D. afzeliae | SDBR-CMU467 T | OQ600199 | OQ603502 | OQ678279 | OQ646882 | OQ646886 |
| D. ampelina | CBS 114016 T | AF230751 | AY745056 | JX275452 | AY745026 | N/A |
| D. anhuiensis | CNUCC 201901 T | MN219718 | MN224668 | MN227008 | MN224549 | MN224556 |
| D. anhuiensis | CNUCC 201902 | MN219727 | MN224669 | MN227009 | MN224550 | MN224557 |
| D. annellsiae | BRIP 59731a T | OM918687 | OM960596 | OM960614 | N/A | N/A |
| D. arecae | CBS 161.64 T | KC343032 | KC343758 | KC344000 | KC343274 | KC343516 |
| D. arecae | CBS 535.75 | KC343033 | KC343759 | KC344001 | KC343275 | KC343517 |
| D. arengae | CBS 114979 T | KC343034 | KC343760 | KC344002 | KC343276 | KC343518 |
| D. aseana | MFLUCC 12-0299a T | KT459414 | KT459448 | KT459432 | KT459464 | N/A |
| D. baccae | CPC 20585 | KJ160564 | KJ160596 | N/A | N/A | N/A |
| D. betulicola | CFCC 51128 T | KX024653 | KX024655 | KX024657 | KX024659 | KX024661 |
| D. betulicola | CFCC 51129 | KX024654 | KX024656 | KX024658 | KX024660 | KX024662 |
| D. bohemiae | CBS 143347 T | MG281015 | MG281536 | MG281188 | MG281710 | MG281361 |
| D. bohemiae | CBS 143348 | MG281016 | MG281537 | MG281189 | MG281711 | MG281362 |
| D. bombacis | SDBR-CMU468 T | OQ600198 | OQ603501 | OQ678278 | OQ646881 | OQ646885 |
| D. bounty | BRIP 59361a T | OM918690 | OM960599 | OM960617 | N/A | N/A |
| D. camelliae-oleiferae | HNZZ027 T | MZ509555 | MZ504707 | MZ504718 | MZ504685 | MZ504696 |
| D. camelliae-oleiferae | HNZZ030 | MZ509556 | MZ504708 | MZ504719 | MZ504686 | MZ504697 |
| D. camelliae-sinensis | SAUCC194.103 | MT822631 | MT855943 | MT855828 | MT855710 | MT855599 |
| D. camelliae-sinensis | SAUCC194.92 T | MT822620 | MT855932 | MT855817 | MT855699 | MT855588 |
| D. canthii | CBS 132533 T | JX069864 | KC843120 | KC843230 | KC843174 | N/A |
| D. careyae | SDBR-CMU469 T | OQ600196 | OQ603449 | OQ678276 | OQ646879 | OQ646883 |
| D. carpini | CBS 114437 | KC343044 | KC343770 | KC344012 | KC343286 | KC343528 |
| D. cercidis | CFCC 52565 T | MH121500 | MH121542 | MH121582 | MH121424 | MH121460 |
| D. chamaeropis | CBS 454.81 T | KC343048 | KC343774 | KC344016 | KC343290 | KC343532 |
| D. chamaeropis | CBS 753.70 | KC343049 | KC343775 | KC344017 | KC343291 | KC343533 |
| D. chiangmaiensis | MFLUCC 18-0544 T | OK393703 | OL439483 | N/A | N/A | N/A |
| D. chiangmaiensis | MFLUCC 18-0935 | OK393704 | OL439484 | N/A | N/A | N/A |
| D. chiangmaiensis | MFLUCC 21-0212 | OK393702 | OL439482 | OK490918 | N/A | N/A |
| D. cinerascens | CBS 719.96 | KC343050 | KC343776 | KC344018 | KC343292 | KC343534 |
| D. cissampeli | CBS 141331 T | KX228273 | N/A | KX228384 | N/A | KX228366 |
| D. corylicola | CFCC 53986 T | MW839880 | MW815894 | MW883977 | MW836684 | MW836717 |
| D. cytosporella | FAU461 T | KC843307 | KC843116 | KC843221 | KC843141 | MF418283 |
| D. decedens | CBS 109772 | KC343059 | KC343785 | KC344027 | KC343301 | KC343543 |
| D. decedens | CBS 114281 | KC343060 | KC343786 | KC344028 | KC343302 | KC343544 |
| Taxa Names |
Culture Accession
No. |
GenBank Accession No. | ||||
| ITS | tef1-α | tub2 | cal | his3 | ||
| D. decorticans | CBS 114200 | KC343169 | KC343895 | KC344137 | KC343411 | KC343653 |
| D. decorticans | CBS 114649 | KC343170 | KC343896 | KC344138 | KC343412 | KC343654 |
| D. delonicis | MFLU 16-1059 T | MT215490 | N/A | MT212209 | N/A | N/A |
| D. detrusa | CBS 109770 | KC343061 | KC343787 | KC344029 | KC343303 | KC343545 |
| D. detrusa | CBS 114652 | KC343062 | KC343788 | KC344030 | KC343304 | KC343546 |
| D. elaeagni-glabrae | CGMCC 3.18287 T | KX986779 | KX999171 | KX999212 | KX999281 | KX999251 |
| D. elaeagni-glabrae | LC4806 | KX986780 | KX999172 | KX999213 | KX999282 | KX999252 |
| D. endocitricola | ZHKUCC 20-0012 T | MT355682 | MT409336 | MT409290 | MT409312 | N/A |
| D. endocitricola | ZHKUCC 20-0013 | MT355683 | MT409337 | MT409291 | MT409313 | N/A |
| D. eugeniae | CBS 444.82 T | KC343098 | KC343824 | KC344066 | KC343340 | KC343582 |
| D. eugeniae | DPFT23 | MK110366 | MK117267 | MK122799 | N/A | N/A |
| D. fibrosa | CBS 109751 | KC343099 | KC343825 | KC344067 | KC343341 | KC343583 |
| D. fibrosa | CBS 113830 | KC343100 | KC343826 | KC344068 | KC343342 | KC343584 |
| D. foeniculina | CBS 111553 T | KC843295 | KC843104 | KC843209 | KC843129 | N/A |
| D. foeniculina (=D. foeniculacea) | CBS 123208 T | KC343104 | KC343830 | KC344072 | KC343346 | KC343588 |
| D. foeniculina (=D. rhoicola) | CBS 129528 T | JF951146 | KC843100 | KC843205 | KC843124 | N/A |
| D. forlicesenica | MFLUCC 17-1015 T | KY964215 | KY964171 | KY964099 | N/A | N/A |
| D. fraxini-angustifoliae | BRIP 54781 T | JX862528 | JX862534 | KF170920 | N/A | N/A |
| D. fraxini-angustifoliae | MFLUCC 15-0748 | KT459428 | KT459446 | KT459430 | KT459462 | N/A |
| D. fulvicolor | CGMCC 3.19601 T | MK626859 | MK654806 | MK691236 | MK691132 | MK726163 |
| D. fulvicolor | PSCG 057 | MK626858 | MK654810 | MK691233 | MK691131 | MK726164 |
| D. globoostiolata | MFLUCC 23-0025 T | OQ600200 | OQ603503 | OQ678280 | N/A | N/A |
| D. gossiae | BRIP 59730a T | OM918693 | OM960602 | OM960620 | N/A | N/A |
| D. guangxiensis | JZB320091 | MK335769 | MK523564 | MK500165 | MK736724 | N/A |
| D. guangxiensis | JZB320094 T | MK335772 | MK523566 | MK500168 | MK736727 | N/A |
| D. hickoriae | CBS 145.26 T | KC343118 | KC343844 | KC344086 | KC343360 | KC343602 |
| D. hispaniae | CBS 143351 T | MG281123 | MG281644 | MG281296 | MG281820 | MG281471 |
| D. hispaniae | CBS 143352 | MG281124 | MG281645 | MG281297 | MG281821 | MG281472 |
| D. hongkongensis | CBS 115448 T | KC343119 | KC343845 | KC344087 | KC343361 | KC343603 |
| D. howardiae | BRIP 59697a T | OM918695 | OM960604 | OM960622 | N/A | N/A |
| D. huangshanensis | CNUCC 201903 T | MN219729 | MN224670 | MN227010 | N/A | MN224558 |
| D. huangshanensis | CNUCC 201904 | MN219730 | MN224671 | MN227011 | N/A | MN224559 |
| D. hunanensis | HNZZ023 T | MZ509550 | MZ504702 | MZ504713 | MZ504680 | MZ504691 |
| D. hunanensis | HNZZ025 | MZ509551 | MZ504703 | MZ504714 | MZ504681 | MZ504692 |
| D. hungariae | CBS 143353 T | MG281126 | MG281647 | MG281299 | MG281823 | MG281474 |
| D. hungariae | CBS 143354 | MG281127 | MG281648 | MG281300 | MG281824 | MG281475 |
| Taxa Names |
Culture Accession
No. |
GenBank Accession No. | ||||
| ITS | tef1-α | tub2 | cal | his3 | ||
| D. impulsa | CBS 114434 | KC343121 | KC343847 | KC344089 | KC343363 | KC343605 |
| D. impulsa | CBS 141.27 | KC343122 | KC343848 | KC344090 | KC343364 | KC343606 |
| D. inconspicua | CBS 133813 T | KC343123 | KC343849 | KC344091 | KC343365 | KC343607 |
| D. inconspicua | URM7776 | MG696772 | MG710414 | MG710395 | MG710391 | MG710410 |
| D. isoberliniae | CPC 22549 T | KJ869133 | N/A | KJ869245 | N/A | N/A |
| D. juglandicola | CFCC 51134 T | KU985101 | KX024628 | KX024634 | KX024616 | KX024622 |
| D. juglandicola | CFCC 51135 | KU985102 | KX024629 | KX024635 | KX024617 | KX024623 |
| D. krabiensis | MFLUCC 17-2481 T | MN047101 | MN433215 | MN431495 | N/A | N/A |
| D. limonicola | CPC 27869 | MF418419 | MF418498 | MF418579 | MF418253 | MF418339 |
| D. imonicola | CPC 28200 T | NR_154980 | MF418501 | MF418582 | MF418256 | MF418342 |
| D. litchiicola | BRIP 54900 T | JX862533 | JX862539 | KF170925 | N/A | N/A |
| D. lithocarpi | CGMCC 3.15175 T | KC153104 | KC153095 | KF576311 | KF576236 | N/A |
| D. ithocarpi | CGMCC 3.17098 | KF576276 | KF576251 | KF576300 | KF576228 | N/A |
| D. lithocarpi | LC3079 | KP267851 | KP267925 | KP293431 | N/A | KP293505 |
| D. lutescens | SAUCC 194.36 T | MT822564 | MT855877 | MT855761 | MT855647 | MT855533 |
| D. macintoshii | BRIP 55064a T | KJ197289 | KJ197251 | KJ197269 | N/A | N/A |
| D. maytenicola | CPC 21896 T | KF777157 | N/A | KF777250 | N/A | N/A |
| D. melastomatis | SAUCC194.55 T | MT822583 | MT855896 | MT855780 | MT855664 | MT855551 |
| D. melastomatis | SAUCC194.80 | MT822608 | MT855920 | MT855805 | MT855687 | MT855576 |
| D. meliae | CFCC 53089 T | MK432657 | ON081654 | MK578057 | N/A | ON081662 |
| D. meliae | CFCC 53090 | MK432658 | ON081655 | MK578058 | N/A | ON081663 |
| D. melitensis | CPC 27873 T | MF418424 | MF418503 | MF418584 | MF418258 | MF418344 |
| D. melitensis | CPC 27875 | MF418425 | MF418504 | MF418585 | MF418259 | MF418345 |
| D. millettiae | GUCC9167 T | MK398674 | MK480609 | MK502089 | MK502086 | N/A |
| D. musigena | CBS 129519 T | KC343143 | KC343869 | KC344111 | KC343385 | KC343627 |
| D. musigena | HKFZL006 | MK050110 | MK054238 | MK079660 | N/A | N/A |
| D. nebulae | Phom240 | KY511315 | MH708543 | KY511346 | N/A | N/A |
| D. nebulae | PMM1681 T | KY511337 | MH708552 | KY511369 | N/A | N/A |
| D. nelumbonis | R. Kirschner 4114 T | KT821501 | N/A | LC086652 | N/A | N/A |
| D. nigra | JZB320170 T | MN653009 | MN892277 | MN887113 | N/A | N/A |
| D. norfolkensis | BRIP 59718a T | OM918699 | OM960608 | OM960626 | N/A | N/A |
| D. oculi | HHUF 30565 T | LC373514 | LC373516 | LC373518 | N/A | N/A |
| D. oncostoma | CBS 100454 | KC343160 | KC343886 | KC344128 | KC343402 | KC343644 |
| D. oncostoma | CBS 589.78 | KC343162 | KC343888 | KC344130 | KC343404 | KC343646 |
| D. osmanthi | GUCC9165 T | MK398675 | MK480610 | MK502091 | MK502087 | N/A |
| D. pandanicola | MFLUCC 17-0607 T | MG646974 | N/A | MG646930 | N/A | N/A |
| D. parapterocarpi | CPC 22729 T | KJ869138 | N/A | KJ869248 | N/A | N/A |
| D. parvae | CGMCC 3.19599 T | MK626919 | MK654858 | MK691248 | N/A | MK726210 |
| D. parvae | PSCG035 | MK626920 | MK654859 | MK691249 | MK691169 | MK726211 |
| D. pascoei | BPPCA147 | MK111091 | MK117255 | MK122790 | N/A | N/A |
| Taxa Names |
Culture Accession
No. |
GenBank Accession No. | ||||
| ITS | tef1-α | tub2 | cal | his3 | ||
| D. pascoei | BRIP 54847 T | JX862532 | JX862538 | KF170924 | N/A | N/A |
| D. perseae | BPPCA257 | MK111098 | MK117256 | MK122791 | N/A | N/A |
| D. perseae | CBS 151.73 T | KC343173 | KC343899 | KC344141 | KC343415 | KC343657 |
| D. pescicola | MFLUCC 16-0105 T | KU557555 | KU557623 | KU557579 | KU557603 | N/A |
| D. pescicola | PSCG036 | MK626855 | MK654796 | MK691226 | MK691116 | MK726159 |
| D. phillipsii | CAA817 T | MK792305 | MK828076 | MN000351 | MK883831 | MK871445 |
| D. phillipsii | CAA818 | MK792307 | MK828078 | MN000352 | MK883833 | MK871447 |
| D. phoenicicola | CBS 161.64 T | MH858400 | GQ250349 | JX275440 | JX197432 | N/A |
| D. phoenicicola | KUC21217 | KT207733 | N/A | KT207633 | N/A | N/A |
| D. phoenicicola | KUC21243 | KT207761 | N/A | KT207659 | N/A | N/A |
| D. phoenicicola | PBMR340 | MK111086 | MK117271 | MK122805 | N/A | N/A |
| D. phoenicicola | PBMR345 | MK111088 | MK117275 | MK122810 | N/A | N/A |
| D. podocarpi-macrophylli | CGMCC 3.18281 T | KX986774 | KX999167 | KX999207 | KX999278 | KX999246 |
| D. podocarpi-macrophylli | LC6229 | KX986771 | KX999164 | KX999204 | KX999277 | KX999243 |
| D. poincianellae | URM 7932 T | MH989509 | MH989538 | MH989537 | MH989540 | MH989539 |
| D. portugallica | CPC 34247 T | MH063905 | MH063911 | MH063917 | MH063893 | MH063899 |
| D. portugallica | CPC 34248 | MH063906 | MH063912 | MH063918 | MH063894 | MH063900 |
| D. pseudoinconspicua | URM 7873 | MH122535 | MH122530 | MH122521 | MH122525 | MH122518 |
| D. pseudoinconspicua | URM 7874 T | MH122538 | MH122533 | MH122524 | MH122528 | MH122517 |
| D. pseudomangiferae | CBS 101339 T | KC343181 | KC343907 | KC344149 | KC343423 | KC343665 |
| D. pseudomangiferae | CBS 388.89 | KC343182 | KC343908 | KC344150 | KC343424 | KC343666 |
| D. pseudooculi | HHUF 30617 T | NR_161019 | LC373517 | LC373519 | N/A | N/A |
| D. pseudophoenicicola | CBS 462 69 T | KC343184 | KC343910 | KC344152 | KC343426 | KC343668 |
| D. pseudophoenicicola | HNQZ01 | MN424520 | MN424562 | MN424534 | MN424576 | MN424548 |
| D. psoraleae | CBS 136412 T | KF777158 | KF777245 | KF777251 | N/A | N/A |
| D. psoraleae pinnatae | CBS 136413 T | KF777159 | N/A | KF777252 | N/A | N/A |
| D. pterocarpi | MFLUCC 10-0571 T | JQ619899 | JX275416 | JX275460 | JX197451 | N/A |
| D. pterocarpi | MFLUCC 10-0588 | JQ619900 | JX275417 | JX275461 | JX197452 | N/A |
| D. pterocarpicola | MFLUCC 10-0580 T | JQ619887 | JX275403 | JX275441 | JX197433 | N/A |
| D. pungensis | SAUCC 194.112 T | MT822640 | MT855952 | MT855837 | MT855719 | MT855607 |
| D. pungensis | SAUCC 194.89 | MT822617 | MT855929 | MT855814 | MT855696 | MT855585 |
| D. ravennica | MFLUCC 15-0479 T | KU900335 | N/A | KX432254 | N/A | N/A |
| D. ravennica | MFLUCC 17-1029 | KY964191 | KY964147 | KY964075 | N/A | N/A |
| D. rhodomyrti | CFCC 53101 T | MK432643 | MK578119 | MK578046 | MK442965 | MK442990 |
| Taxa Names |
Culture Accession
No. |
GenBank Accession No. | ||||
| ITS | tef1-α | tub2 | cal | his3 | ||
| D. rhodomyrti | CFCC 53102 | MK432644 | MK578120 | MK578047 | MK442966 | MK442991 |
| D. rostrata | CFCC 50062 T | KP208847 | KP208853 | KP208855 | KP208849 | KP208851 |
| D. rostrata | CFCC 50063 | KP208848 | KP208854 | KP208856 | KP208850 | KP208852 |
| D. rumicicola | JZB320006 T | MK066126 | MK078545 | MK078546 | N/A | N/A |
| D. rumicicola | MFLUCC 18-0739 | MH846233 | MK049554 | MK049555 | N/A | N/A |
| D. saccarata | CBS 116311 T | KC343190 | KC343916 | KC344158 | KC343432 | KC343674 |
| D. salinicola | MFLU 17-2592 | MN047099 | MN077074 | N/A | N/A | N/A |
| D. salinicola | MFLU 18-0553 T | MN047098 | MN077073 | N/A | N/A | N/A |
| D. samaneae | SDBR-CMU470 T | OQ600197 | OQ603500 | OQ678277 | OQ646880 | OQ646884 |
| D. schimae | CFCC 53103 T | MK432640 | MK578116 | MK578043 | MK442962 | MK442987 |
| D. schimae | CFCC 53104 | MK432641 | MK578117 | MK578044 | MK442963 | MK442988 |
| D. schisandrae | CFCC 51988 T | KY852497 | KY852509 | KY852513 | KY852501 | KY852505 |
| D. schisandrae | CFCC 51989 | KY852498 | KY852510 | KY852514 | KY852502 | KY852506 |
| D. scobina | CBS 251.38 | KC343195 | KC343921 | KC344163 | KC343437 | KC343679 |
| D. searlei | CBS 146456 T | MN708231 | N/A | MN696540 | N/A | N/A |
| D. sennae | CFCC 51636 T | KY203724 | KY228885 | KY228891 | KY228875 | N/A |
| D. sennae | CFCC 51637 | KY203725 | KY228886 | KY228892 | KY228876 | N/A |
| D. spinosa | CGMCC 3.19602 T | MK626849 | MK654811 | MK691234 | MK691129 | MK726156 |
| D. spinosa | PSCG388 | MK626860 | MK654798 | MK691229 | MK691128 | MK726171 |
| D. stictica | CBS 370.54 T | KC343212 | KC343938 | KC344180 | KC343454 | KC343696 |
| D. taiwanensis | NTUCC 18-105-1 T | MT241257 | MT251199 | MT251202 | MT251196 | N/A |
| D. taiwanensis | NTUCC 18-105-2 | MT241258 | MT251200 | MT251203 | MT251197 | N/A |
| D. taoicola | MFLUCC 16-0117 T | KU557567 | KU557635 | KU557591 | N/A | N/A |
| D. taoicola | PSCG485 | MK626869 | MK654812 | MK691227 | MK691120 | MK726173 |
| D. tectonigena | LC6512 | KX986782 | KX999174 | KX999215 | KX999284 | KX999254 |
| D. tectonigena | MFLUCC 12-0767 T | KU712429 | KU749371 | KU743976 | KU749358 | N/A |
| D. thunbergiae | MFLUCC 10-0576a T | JQ619893 | JX275409 | JX275449 | JX197440 | N/A |
| D. thunbergiae | MFLUCC 10-0576b | JQ619894 | JX275410 | JX275450 | JX197441 | N/A |
| D. toxicodendri | FFPRI420990 | LC275193 | LC275217 | LC275225 | LC275201 | LC275209 |
| D. vangueriae | CPC 22703 T | KJ869137 | N/A | KJ869247 | N/A | N/A |
| D. velutina | CGMCC 3.18286 T | KX986790 | KX999182 | KX999223 | N/A | KX999261 |
| D. velutina | LC4419 | KX986789 | KX999181 | KX999222 | KX999286 | KX999260 |
| D. verniciicola | CFCC 53109 T | MK573944 | MK574619 | MK574639 | MK574583 | MK574599 |
| D. verniciicola | CFCC 53110 | MK573945 | MK574620 | MK574640 | MK574584 | MK574600 |
| D. viniferae | JZB320071 T | MK341550 | MK500107 | MK500112 | MK500119 | N/A |
| D. viniferae | JZB320072 | MK341551 | MK500108 | MK500113 | MK500120 | N/A |
| D. woolworthii | CBS 148.27 | KC343245 | KC343971 | KC344213 | KC343487 | KC343729 |
| D. xishuangbanica | CGMCC 3.18282 | KX986783 | KX999175 | KX999216 | N/A | KX999255 |
| D. xishuangbanica | CGMCC 3.18283 T | KX986784 | KX999176 | KX999217 | N/A | N/A |
| D. zaobaisu | CGMCC 3.19598 T | MK626922 | MK654855 | MK691245 | N/A | MK726207 |
| Taxa Names |
Culture Accession
No. |
GenBank Accession No. | ||||
| ITS | tef1-α | tub2 | cal | his3 | ||
| D. zaobaisu | PSCG032 | MK626923 | MK654856 | MK691246 | N/A | MK726208 |
| D. zhaoqingensis | ZHKUCC 22-0056 T | ON322885 | N/A | ON315074 | ON315000 | ON315015 |
| D. zhaoqingensis | ZHKUCC 22-0057 | ON322886 | ON315043 | ON315075 | N/A | ON315016 |
The ex-type cultures are indicated with the superscript “T” and the newly generated sequences are indicated in bold. “N/A” indicates the sequence is unavailable. “*” indicates a whole genomic DNA strain.