Table 2. Lifetimes of Peptide IV Associates.
| system | associate | force field | median lifetime (ns) | longest lifetime (ns) | trajectory percentage | associates in 1000 ns |
|---|---|---|---|---|---|---|
| VI/d | dimer | Amber | 0.05 | 2.70 | 10.3% | 14587 |
| CHARMM | 0.05 | 12.00 | 30.6% | 17800 | ||
| trimer | Amber | 0.02 | 0.13 | 0.1% | 393 | |
| CHARMM | 0.04 | 0.56 | 0.7% | 1610 | ||
| VI/e | dimer | Amber | 0.03 | 3.87 | 36.9% | 82800 |
| CHARMM | 0.04 | 5.81 | 18.4% | 22913 | ||
| trimer | Amber | 0.01 | 0.30 | 2.2% | 10720 | |
| CHARMM | 0.02 | 0.50 | 0.4% | 1240 | ||
| tetramer | Amber | 0.01 | 0.08 | 0.1% | 913 | |
| CHARMM | 0.01 | 0.03 | <0.1% | 67 | ||
| pentamer | Amber | 0.01 | 0.01 | <0.1% | 40 | |
| CHARMM | – | – | – | – |