Table 4.
Top ten biological processes that were enriched in significantly upregulated and differentially expressed genes (DEGs) in—or overlapping across—the treatment groups (for more details, see Figure 2a).
| GO: Category | GO: Biological Process Term | p Value 1 | DEGs 2 | Category 3 | Treatment |
| GO:0019320 | Hexose catabolic process | 1.37 × 10−3 | 1 | 3 | VI, VF, VI+FPF, VF+FPF |
| GO:0019388 | Galactose catabolic process | 1.37 × 10−3 | 1 | 3 | |
| GO:0033499 | Galactose catabolic process via UDP-galactose | 1.37 × 10−3 | 1 | 3 | |
| GO:0046365 | Monosaccharide catabolic process | 1.37 × 10−3 | 1 | 4 | |
| GO:0006012 | Galactose metabolic process | 2.74 × 10−3 | 1 | 10 | |
| GO:0005996 | Monosaccharide metabolic process | 6.17 × 10−3 | 1 | 36 | |
| GO:0016052 | Carbohydrate catabolic process | 6.17 × 10−3 | 1 | 27 | |
| GO:0019318 | Hexose metabolic process | 6.17 × 10−3 | 1 | 34 | |
| GO:0044282 | Small molecule catabolic process | 7.62 × 10−3 | 1 | 50 | |
| GO:0005975 | Carbohydrate metabolic process | 2.15 × 10−2 | 1 | 157 | |
| GO:0009617 | Response to bacterium | 3.51 × 10−6 | 2 | 9 | VI, VF+FPF, VI+FPF |
| GO:0042742 | Defense response to bacterium | 3.51 × 10−6 | 2 | 9 | |
| GO:0006952 | Defense response | 5.39 × 10−6 | 2 | 22 | |
| GO:0006955 | Immune response | 5.39 × 10−6 | 2 | 24 | |
| GO:0009607 | Response to biotic stimulus | 5.39 × 10−6 | 2 | 21 | |
| GO:0043207 | Response to external biotic stimulus | 5.39 × 10−6 | 2 | 21 | |
| GO:0044419 | Biological process involved in interspecies interaction between organisms | 5.39 × 10−6 | 2 | 24 | |
| GO:0045087 | Innate immune response | 5.39 × 10−6 | 2 | 17 | |
| GO:0051707 | Response to other organism | 5.39 × 10−6 | 2 | 21 | |
| GO:0098542 | Defense response to other organism | 5.39 × 10−6 | 2 | 21 | |
| GO:0050896 | Response to stimulus | 5.67 × 10−3 | 2 | 902 | |
| GO:0050832 | Defense response to fungus | 1.81 × 10−3 | 1 | 1 | VF+FPF |
| GO:0050830 | Defense response to Gram-positive bacterium | 1.81 × 10−3 | 1 | 1 | |
| GO:0050829 | Defense response to Gram-negative bacterium | 1.81 × 10−3 | 1 | 1 | |
| GO:0048651 | Polyphenic determination, influence by environmental factors | 1.81 × 10−3 | 1 | 1 | |
| GO:0048650 | Caste determination, influence by environmental factors | 1.81 × 10−3 | 1 | 1 | |
| GO:0009620 | Response to fungus | 1.81 × 10−3 | 1 | 1 | |
| GO:0048648 | Caste determination | 1.81 × 10−3 | 1 | 1 | |
| GO:0048647 | Polyphenic determination | 1.81 × 10−3 | 1 | 1 | |
| GO:0001906 | Cell killing | 2.90 × 10−3 | 1 | 2 | |
| GO:0031640 | Killing of cells of other organisms | 2.90 × 10−3 | 1 | 2 |
1 Overrepresented p-value for this category. 2 Number of differentially expressed genes in this category identified by g: Profiler with a cutoff of p < 0.05. 3 Total number of genes in this biological process category.