Table 2.

Top three clusters with their representative enriched identifier or terms [one per cluster]. Count is the number of DEPs with membership in the given reactome gene set identifier or gene ontology [GO] term. % is the percentage of all DEPs that are found in the given ontology term [only input proteins with at least one ontology term annotation are included in the calculation]. Log10[P] is the p-value in log base 10. Log10[q] is the multi-test adjusted p-value in log base 10. PATTERN shows the color code used for the protein lists where the term is found to be statistically significant, i.e., the multiple colors indicate a pathway/process that is shared across the three DEP lists [Red-SKBR-3; Blue-BT474; Green-MDA-MB-361]. The analysis was performed by tools available at https://metascape.org, accessed on 27 October 2022.

PATTERN	Identifier/Term	Category	Descrlptlon	Count	%	Log10(P)	Log10(q)
■ ■ ■	R-HSA-556833	Reactome Gene Sets	metabolism of lipids	36	8.98	−10.5	−6.15
■ ■ ■	GO:0090407	GO Biological Processes	organophosphate biosynthetic process	28	6.98	−8.89	−4.84
■ ■ ■	GO:0043414	GO Biological Processes	macromolecule methylation	11	7.97	−7.18	−3.13