Table 2.
Main clusters detected, CC, number of isolates, slaughterhouse, timeframe, ranges of allelic distances and SNPs.
CC | Cluster | N° of Strains | Slaughterhouse | Timeframe | AD | SNPs |
---|---|---|---|---|---|---|
CC1 | I | 26 | M1 | October 2016–January 2018 | 0–7 | 4–10 |
CC6 | I | 16 | M1 | May 2016–January 2018 | 0–7 | 1–17 |
II | 4 | M1 | July 2016–January 2018 | 1–7 | 6–12 | |
III | 3 | M1 | July 2016–January 2018 | 0–1 | 1–3 | |
IV | 2 | M1 | April–October 2017 | 1 | 0 | |
V | 2 | M1 | April 2017 | 1 | 2 | |
CC9 | I | 30 | M2 | September–December 2017 | 0–7 | 0–16 |
II | 15 | M2 | September–December 2017 | 0–5 | 1–20 | |
III | 2 | M2 | September 2017 | 1 | 0 | |
IV | 6 | M1 | April 2017–January 2018 | 0–1 | 1–6 | |
CC121 | I | 4 | M1 | May–October 2017 | 0–7 | 1–19 |
II | 6 | M1 | April–October 2017 | 0–1 | 0–5 | |
III | 2 | M2 | September–December 2017 | 1 | 1 |
CC—Clonal Complex; AD—allelic distance.